genome.fa.s11663.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011663.1 Corchorus capsularis cultivar CVL-1 contig11684, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66601

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101--188	31	2.8	32	81	10	101	30	10	21	37	1.87
3667--3710	15	2.9	15	79	0	52	6	9	6	77	1.13
6872--6897	3	8.7	3	100	0	52	69	0	0	30	0.89
8552--8614	27	2.2	28	81	13	76	17	23	0	58	1.38
8694--9065	21	17.3	21	71	14	244	19	20	6	53	1.66
8797--9065	22	12.3	22	74	13	227	18	20	5	55	1.63
8797--9065	43	6.2	43	76	12	194	18	20	5	55	1.63
8906--8984	14	5.7	13	68	12	50	17	20	2	59	1.49
9060--9242	55	3.3	55	94	0	321	26	18	6	49	1.70
15211--15296	27	3.2	27	78	6	84	47	25	12	13	1.79
18035--18061	14	1.9	14	100	0	54	22	0	40	37	1.54
19485--19595	42	2.6	42	91	0	195	43	9	15	32	1.78
20330--20407	21	3.7	21	77	14	88	23	20	7	48	1.75
20326--20409	42	2.0	43	88	2	125	21	21	7	50	1.72
20326--20423	42	2.3	42	80	5	108	21	20	7	51	1.71
20759--20889	55	2.4	55	84	7	185	22	17	7	52	1.69
21495--21856	51	7.1	51	84	3	455	36	18	4	40	1.72
24355--24434	27	3.0	27	90	0	115	41	22	18	17	1.90
28804--28863	21	2.9	21	74	0	66	31	18	11	38	1.87
29578--29631	23	2.3	23	87	6	74	11	18	16	53	1.72
29774--29800	2	13.5	2	100	0	54	51	0	0	48	1.00
30829--30867	2	20.0	2	84	5	53	51	5	0	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36590--36650	24	2.5	24	94	0	104	45	18	9	26	1.80
46750--46794	20	2.2	20	92	0	72	28	15	2	53	1.54
48994--49047	12	4.4	12	86	4	72	37	12	22	27	1.91
48994--49047	25	2.2	24	93	3	90	37	12	22	27	1.91
49004--49057	24	2.4	22	85	14	67	33	11	25	29	1.91
49212--49240	12	2.3	13	94	5	51	13	0	0	86	0.58
49595--49815	111	2.0	111	95	0	397	36	19	13	29	1.91
53584--53631	15	3.0	16	78	9	62	39	14	27	18	1.90
54222--54286	22	3.0	22	93	0	112	23	40	23	13	1.90
58217--58264	15	3.0	16	78	9	62	39	14	27	18	1.90
58595--58690	44	2.2	44	84	3	131	33	19	16	30	1.94
58816--58876	22	2.8	22	87	0	86	24	40	21	13	1.88
59026--59067	22	1.9	22	95	0	75	21	38	23	16	1.93
63506--63544	21	1.9	21	94	5	71	30	35	28	5	1.79

Tables:   1

The End!