genome.fa.s11665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011665.1 Corchorus capsularis cultivar CVL-1 contig11686, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51983

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956--1210	125	2.0	128	85	5	349	22	23	18	35	1.96
3486--3541	29	1.9	29	82	7	69	44	10	17	26	1.82
7011--7046	19	1.9	18	88	5	54	30	25	2	41	1.69
8568--8598	16	1.9	16	93	0	53	54	19	6	19	1.65
13301--13336	19	1.9	18	88	5	54	33	22	2	41	1.68
14405--14450	22	2.1	22	87	0	65	23	26	26	23	2.00
18171--18208	15	2.5	15	91	4	58	50	0	0	50	1.00
20562--21724	589	2.0	589	98	0	2256	28	15	14	41	1.87
22426--22485	21	2.9	21	76	0	75	31	21	11	35	1.90
28596--28622	6	4.5	6	100	0	54	55	14	0	29	1.40
28619--28653	13	2.7	13	95	0	61	60	8	11	20	1.57
36044--36077	15	2.4	14	90	5	50	55	2	20	20	1.56
38259--38356	40	2.5	40	87	0	142	31	17	7	43	1.76
38461--38493	14	2.4	14	94	0	57	39	9	6	45	1.61
39517--39947	50	8.7	49	82	7	442	37	17	26	18	1.93
39509--39935	98	4.3	99	82	7	510	38	17	26	17	1.92
39509--39935	200	2.2	198	85	5	578	38	17	26	17	1.92
39868--39995	43	2.9	43	83	5	148	29	18	26	25	1.98
39868--40038	91	1.9	91	80	7	204	31	19	27	21	1.97
40009--40132	41	3.0	40	81	16	139	42	24	21	11	1.85
40111--40157	25	1.9	25	86	4	69	59	23	10	6	1.53
40707--41025	51	6.3	51	76	9	269	36	14	4	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40707--41025	152	2.1	152	82	8	373	36	14	4	43	1.67
40921--40963	20	2.2	20	87	8	61	32	13	4	48	1.63
41391--41432	18	2.2	20	83	8	52	2	30	2	64	1.19
44115--44168	17	3.2	17	79	7	65	51	16	7	24	1.69
45674--45718	22	2.2	22	84	11	60	26	13	4	55	1.57
46286--46342	14	4.3	13	78	10	62	40	15	7	36	1.75
49121--49834	50	14.5	50	81	6	830	39	19	26	14	1.90
49121--49834	148	4.8	148	82	5	881	39	19	26	14	1.90
50672--50698	14	1.9	14	100	0	54	29	29	0	40	1.57
50683--51338	35	19.1	34	81	8	680	32	16	10	40	1.83
50910--50965	26	2.2	25	84	9	69	35	10	8	44	1.71

Tables:   1

The End!