Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011668.1 Corchorus capsularis cultivar CVL-1 contig11689, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30275

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
581--928
49
7.2
48
81
7
332
35
15
28
19
1.93
606--896
92
3.1
92
81
6
239
36
15
26
20
1.93
922--1033
41
2.8
40
83
6
127
41
20
25
11
1.86
1150--1174
13
1.9
13
100
0
50
20
16
0
64
1.30
1610--1928
51
6.3
51
76
9
269
36
14
4
43
1.67
1610--1928
152
2.1
152
82
8
373
36
14
4
43
1.67
1824--1866
20
2.2
20
87
8
61
32
13
4
48
1.63
8374--8411
20
2.0
20
89
5
60
7
2
23
65
1.32
16328--16369
16
2.7
16
85
3
50
47
2
2
47
1.28
17171--17301
65
2.0
65
91
2
210
38
12
27
22
1.89
18089--18132
21
2.1
21
83
8
54
18
31
9
40
1.81
18431--18543
32
3.5
31
84
8
136
13
37
38
10
1.79
18431--18563
64
2.0
64
81
8
153
13
36
38
12
1.82
18767--18827
32
1.9
32
83
3
79
45
3
13
37
1.59
18854--18891
17
2.3
16
90
4
58
47
0
13
39
1.42
20793--20853
30
2.0
30
87
0
86
39
11
19
29
1.87
22717--22791
16
4.8
16
83
3
98
42
37
10
9
1.72
22717--22791
31
2.4
32
84
2
98
42
37
10
9
1.72
23808--23888
2
39.5
2
75
14
58
46
4
6
41
1.50
23808--23841
11
3.2
11
95
4
61
47
0
5
47
1.26
24190--24246
15
3.6
15
75
17
53
40
36
15
7
1.75
26588--26632
15
2.9
16
80
6
56
13
15
31
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30044--30108
10
6.2
10
77
13
60
52
0
0
47
1.00
30066--30105
2
21.5
2
85
14
59
55
0
0
45
0.99

Tables:   1

The End!