Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011669.1 Corchorus capsularis cultivar CVL-1 contig11690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36473

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1058--1091
7
4.9
7
100
0
68
14
0
11
73
1.10
3015--3110
51
1.9
51
89
2
149
23
9
27
39
1.85
3156--3191
11
3.3
11
100
0
72
30
25
0
44
1.54
3304--3358
26
2.1
26
83
6
67
30
18
9
41
1.81
4615--4653
10
3.9
10
89
0
60
43
20
5
30
1.73
4615--4653
20
2.0
20
100
0
78
43
20
5
30
1.73
5451--5477
11
2.5
11
100
0
54
92
0
0
7
0.38
5639--5680
12
3.4
12
93
6
75
26
23
16
33
1.96
6551--6599
16
2.9
16
84
6
53
8
14
0
77
0.98
6824--6886
22
3.2
22
70
29
77
38
22
12
26
1.90
11216--11257
21
2.0
21
90
0
66
54
21
2
21
1.56
11350--11398
25
2.0
24
84
4
62
32
32
0
34
1.58
16267--16424
54
2.9
54
83
2
192
44
22
10
22
1.83
17138--17178
13
3.2
13
83
12
50
43
0
0
56
0.99
22832--22877
23
2.0
23
95
0
83
32
10
21
34
1.88
24961--24994
15
2.3
15
89
0
50
0
11
0
88
0.52
28293--28358
32
2.1
32
94
0
114
45
22
9
22
1.80
28293--28343
17
3.1
17
69
8
52
49
23
7
19
1.74
28543--28617
26
2.8
26
83
2
87
42
25
13
18
1.87
30001--30105
30
3.5
30
76
2
104
25
24
25
23
2.00
34870--34903
16
2.0
18
88
11
54
32
11
0
55
1.36

Tables:   1

The End!