Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011671.1 Corchorus capsularis cultivar CVL-1 contig11692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39598

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
734--819
33
2.6
33
94
1
147
18
34
37
9
1.83
734--831
33
3.0
32
89
7
144
16
32
38
12
1.86
903--979
11
5.6
14
70
25
58
29
1
10
58
1.39
918--985
26
2.6
26
86
9
102
33
1
10
54
1.43
898--985
15
6.4
14
68
24
53
31
2
10
55
1.46
1022--1047
10
2.6
10
100
0
52
38
0
30
30
1.58
1134--1177
21
2.1
21
91
0
70
31
9
40
18
1.81
1543--1637
37
2.6
37
80
9
122
13
21
12
52
1.73
2836--2864
13
2.1
14
93
6
51
0
0
13
86
0.58
2836--2864
7
4.3
7
91
8
51
0
0
13
86
0.58
3856--3903
21
2.3
21
100
0
96
47
0
4
47
1.21
4685--4733
24
2.0
24
92
0
80
34
22
18
24
1.96
7556--7599
21
2.1
21
91
0
70
29
6
20
43
1.78
12578--12637
12
5.0
12
74
10
52
66
6
10
16
1.41
13301--13942
318
2.0
318
93
0
1097
34
20
19
24
1.96
17617--17644
10
2.8
10
100
0
56
35
10
42
10
1.74
25256--25298
17
2.6
16
82
7
59
88
9
2
0
0.60
30630--30657
10
2.8
10
100
0
56
21
10
21
46
1.81

Tables:   1

The End!