Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011675.1 Corchorus capsularis cultivar CVL-1 contig11696, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18259

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1276--1309
14
2.4
14
95
0
59
50
14
11
23
1.76
1609--1684
27
2.8
27
81
2
80
44
25
13
17
1.84
2189--2339
45
3.3
45
89
4
214
27
21
23
27
1.99
2209--2363
45
3.3
48
88
5
212
27
20
24
27
1.99
2465--2544
25
3.3
25
74
10
85
26
22
27
23
2.00
2481--2554
22
3.2
22
72
10
67
25
18
25
29
1.98
2463--2571
47
2.3
47
96
0
200
23
21
27
27
1.99
2490--2566
22
3.4
22
73
16
84
19
22
31
27
1.98
2234--2830
208
2.9
208
97
0
1122
30
19
21
28
1.98
2673--2752
25
3.3
25
74
10
94
27
22
26
23
2.00
2689--2762
22
3.2
22
72
10
76
27
18
24
29
1.98
2671--2779
47
2.3
47
98
0
209
24
21
26
27
1.99
2698--2774
22
3.4
22
72
10
82
20
22
29
27
1.98
4188--4316
8
15.8
8
89
10
167
12
13
0
74
1.08
4348--4376
13
2.2
13
100
0
58
44
20
0
34
1.52
4620--4660
15
2.5
17
88
7
59
17
12
0
70
1.16
4615--4660
15
2.9
16
83
9
58
19
13
0
67
1.23
4649--4692
22
2.0
22
86
4
61
18
0
4
77
0.94
4960--4999
19
2.0
20
95
4
73
30
5
5
60
1.40
5066--5096
10
2.9
11
90
9
55
16
19
0
64
1.29
5596--5631
15
2.2
17
90
9
58
0
27
0
72
0.85
8669--8693
10
2.5
10
100
0
50
48
20
8
24
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9607--9640
12
2.7
13
90
4
52
20
5
8
64
1.43
9637--9663
6
4.5
6
100
0
54
29
0
14
55
1.40
16899--16949
26
1.9
27
84
11
70
11
17
1
68
1.29

Tables:   1

The End!