Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011677.1 Corchorus capsularis cultivar CVL-1 contig11698, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28364

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3361--3538
38
4.8
38
79
14
176
32
16
17
32
1.93
3395--3531
69
2.0
68
88
4
204
29
16
19
33
1.94
3435--3494
31
2.0
30
90
3
93
30
16
16
36
1.91
3347--3540
107
1.8
108
86
1
282
33
16
18
31
1.93
6748--6792
20
2.2
20
84
0
54
35
22
15
26
1.94
6764--6872
29
4.1
29
77
20
137
30
18
19
32
1.95
6761--6870
49
2.2
49
81
10
136
31
18
18
31
1.95
6782--6880
49
2.0
49
96
0
180
31
18
20
30
1.96
12017--12041
4
6.2
4
100
0
50
24
0
24
52
1.48
25140--25212
27
2.8
27
81
8
71
15
20
1
63
1.39
25356--25428
29
2.3
33
81
13
82
20
16
4
58
1.54
25434--25560
35
3.6
35
87
5
157
18
24
2
54
1.56
25427--25580
14
10.9
14
66
13
55
18
22
2
55
1.55
25505--25603
51
2.0
49
90
4
153
21
21
2
55
1.53
25814--25933
63
1.9
63
89
3
188
25
20
9
44
1.81
25866--26008
55
2.6
56
83
4
173
27
18
6
47
1.74
26654--26905
51
5.0
51
84
4
289
36
17
4
41
1.69

Tables:   1

The End!