Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011680.1 Corchorus capsularis cultivar CVL-1 contig11701, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69044

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
454--478
10
2.5
10
100
0
50
24
8
20
48
1.76
6185--6269
41
2.1
41
89
6
129
57
7
10
24
1.57
6214--6238
9
2.8
9
100
0
50
72
8
20
0
1.10
6558--6587
11
2.7
11
94
0
51
53
16
0
30
1.44
6585--6629
13
3.5
13
84
3
65
57
8
11
22
1.60
6585--6637
25
2.1
25
86
6
72
60
9
9
20
1.55
7545--7569
10
2.5
10
100
0
50
24
8
20
48
1.76
8235--8331
49
2.0
49
81
0
113
34
16
27
21
1.95
23913--23950
8
4.8
8
93
0
67
21
28
10
39
1.86
30584--30722
46
3.0
46
100
0
278
33
15
15
36
1.88
41326--41369
3
14.7
3
95
0
79
65
2
31
0
1.05
43653--43739
43
2.0
43
100
0
174
42
20
11
25
1.86
45985--46049
34
2.0
32
82
11
80
20
23
0
56
1.42
47922--47980
30
2.0
30
96
0
109
22
10
6
61
1.51
49637--49685
25
2.0
25
92
8
82
48
0
6
44
1.27
59455--59531
22
3.5
22
82
1
84
41
14
6
37
1.71
59471--59552
42
1.9
43
85
2
112
42
14
8
34
1.76
59472--59576
43
2.4
43
80
3
113
43
13
8
34
1.74
59558--59617
20
2.8
21
80
10
59
33
10
8
48
1.67
61652--61681
2
15.0
2
100
0
60
50
0
0
50
1.00
62683--63023
178
1.9
177
91
2
558
29
18
18
33
1.95
64066--64091
12
2.2
12
100
0
52
26
0
23
50
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66865--66901
14
2.6
14
91
0
65
16
10
43
29
1.82
68201--68242
21
2.0
21
86
9
59
26
0
0
73
0.83
68593--68699
33
3.2
33
84
2
117
23
39
27
10
1.87

Tables:   1

The End!