Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011684.1 Corchorus capsularis cultivar CVL-1 contig11705, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33801

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100--533
167
2.6
166
84
3
577
27
14
17
40
1.89
2563--2971
222
1.8
222
96
0
755
31
15
14
38
1.87
3619--3673
25
2.3
25
81
6
69
34
1
7
56
1.38
4370--4430
2
30.5
2
100
0
122
0
0
49
50
1.00
8559--8625
36
1.9
33
88
8
98
22
11
16
49
1.78
11989--12040
23
2.3
23
100
0
104
34
26
17
21
1.95
11676--12352
335
2.0
336
88
3
1015
34
21
15
28
1.94
14547--14713
62
2.6
64
91
3
257
50
4
2
43
1.34
18081--18144
4
16.0
4
96
0
119
23
0
25
51
1.48
18307--18367
2
30.5
2
100
0
122
0
0
49
50
1.00
19941--19998
8
6.8
8
84
9
62
50
8
1
39
1.43
19941--19998
18
3.4
17
83
9
64
50
8
1
39
1.43
21552--21587
2
18.0
2
100
0
72
50
0
0
50
1.00
24654--24709
26
2.2
26
96
0
103
46
7
23
23
1.76
25084--25139
26
2.2
26
96
0
103
25
19
12
42
1.86
27508--27536
4
7.2
4
100
0
58
24
0
0
75
0.80

Tables:   1

The End!