Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011685.1 Corchorus capsularis cultivar CVL-1 contig11706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14489
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:227 original size:11 final size:11

Alignment explanation


    Indices: 211--253  Score: 68
    Period size: 11  Copynumber: 3.9  Consensus size: 11

        201 ATATATTCAT

                     * 
        211 TATTAATTAAC
          1 TATTAATTAGC

                      *
        222 TATTAATTAGT
          1 TATTAATTAGC

                       
        233 TATTAATTAGC
          1 TATTAATTAGC

                      
        244 TATTAATTAG
          1 TATTAATTAG

        254 ATATAGTATA


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  11   29  1.00

ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49


Consensus pattern (11 bp):   
TATTAATTAGC

Found at i:235 original size:22 final size:22

Alignment explanation


    Indices: 210--253  Score: 79
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        200 AATATATTCA

                                  
        210 TTATTAATTAACTATTAATTAG
          1 TTATTAATTAACTATTAATTAG

                      *           
        232 TTATTAATTAGCTATTAATTAG
          1 TTATTAATTAACTATTAATTAG

        254 ATATAGTATA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50


Consensus pattern (22 bp):   
TTATTAATTAACTATTAATTAG
Done.