Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011687.1 Corchorus capsularis cultivar CVL-1 contig11708, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11624

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--70
16
2.0
18
88
11
54
0
11
5
82
0.83
477--514
20
1.9
20
94
0
67
21
31
7
39
1.82
664--731
26
2.6
26
88
0
100
52
10
1
35
1.44
780--819
18
2.2
19
90
4
64
72
0
2
25
0.97
833--879
22
2.1
22
84
7
60
19
0
2
78
0.85
832--867
9
3.9
9
92
3
54
19
0
0
80
0.71
1815--1924
54
2.0
55
91
1
177
32
10
10
45
1.74
7977--8010
8
4.5
8
92
7
54
0
8
11
79
0.94
7591--8342
393
1.9
390
86
3
1071
33
13
13
40
1.82
9634--10257
22
28.9
22
66
16
152
35
16
9
38
1.81
9947--10005
25
2.4
25
88
5
86
40
13
5
40
1.67
10350--10518
22
7.7
22
69
19
104
34
14
10
41
1.79
10353--10661
22
13.9
22
66
19
74
35
15
9
39
1.80
10723--10899
22
7.9
23
75
13
113
38
16
9
35
1.80
10771--10897
44
2.9
45
82
8
154
37
14
10
38
1.80
10770--10901
66
2.0
66
82
5
160
37
15
9
37
1.81
11062--11098
19
1.9
19
89
10
58
64
0
5
29
1.15
11301--11393
38
2.5
36
81
8
123
53
11
19
15
1.72
11519--11583
31
2.1
31
88
2
96
52
3
13
30
1.56

Tables:   1

The End!