Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011688.1 Corchorus capsularis cultivar CVL-1 contig11709, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93540

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
857--991
67
2.0
67
98
0
261
22
23
31
22
1.98
8132--8171
2
20.0
2
100
0
80
50
0
0
50
1.00
10575--10612
2
19.0
2
89
10
60
50
2
0
47
1.15
21719--21760
20
2.2
20
91
4
68
45
0
2
52
1.13
21719--21765
20
2.4
19
86
10
67
42
2
2
53
1.25
21950--21999
18
2.8
18
74
17
50
48
0
6
46
1.27
24811--24852
22
1.9
22
100
0
84
35
14
4
45
1.66
24811--24865
22
2.5
22
88
8
76
32
12
9
45
1.74
25112--25276
31
5.5
31
71
16
148
32
18
21
27
1.96
25117--25276
60
2.7
60
96
0
284
33
17
21
27
1.96
25309--25477
31
5.6
31
75
10
154
27
19
17
35
1.94
25369--25469
29
3.4
29
74
12
107
27
20
19
31
1.97
25338--25478
59
2.4
59
91
1
237
28
19
18
34
1.95
26129--26155
2
13.5
2
100
0
54
51
0
0
48
1.00
28957--29037
31
2.6
32
80
2
92
28
28
28
14
1.96
29077--29156
29
2.7
30
78
9
92
42
15
25
17
1.88
34189--34263
29
2.6
29
72
19
75
21
37
13
28
1.91
42231--42264
2
16.5
2
93
6
59
50
0
2
47
1.16
42786--42821
18
2.0
18
88
0
54
41
2
5
50
1.40
45448--45473
2
13.0
2
100
0
52
50
0
0
50
1.00
49862--50456
303
2.0
303
97
0
1127
27
20
18
32
1.96
55201--55253
27
2.0
27
96
0
97
37
11
16
33
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57311--57336
6
4.3
6
100
0
52
15
0
30
53
1.42
58062--58095
3
11.0
3
93
6
59
64
2
32
0
1.08
68002--68043
2
22.0
2
90
9
70
47
0
0
52
1.00
69965--70063
50
2.0
50
88
4
146
26
22
28
23
1.99
73574--73604
12
2.6
12
89
0
53
22
41
0
35
1.54
75521--75565
21
2.2
21
88
4
65
20
31
8
40
1.83
78743--78777
16
2.2
16
100
0
70
45
17
25
11
1.81
80633--80782
67
2.2
66
85
4
194
52
14
17
15
1.75
81533--81567
16
2.2
16
94
0
61
45
14
25
14
1.82
91443--91508
31
2.1
31
94
5
116
28
21
3
46
1.66
91974--92188
22
9.9
22
76
11
144
38
11
13
36
1.82
92219--92364
22
6.5
22
71
12
107
34
6
19
39
1.79
93408--93478
34
2.1
35
92
7
119
49
0
0
50
1.00
93422--93478
12
5.0
12
74
18
59
49
0
0
50
1.00

Tables:   1

The End!