Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011690.1 Corchorus capsularis cultivar CVL-1 contig11711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75075

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
433--539
33
3.2
32
86
5
142
10
28
38
22
1.87
519--560
21
2.0
21
90
0
66
14
30
30
23
1.94
8985--9052
30
2.3
30
92
5
111
22
22
26
29
1.99
10300--10352
18
3.1
18
78
10
65
22
7
5
64
1.41
10343--10393
6
9.2
6
83
12
56
31
3
13
50
1.60
10335--10390
27
2.1
27
100
0
112
28
7
10
53
1.62
10929--10993
32
2.1
32
85
8
89
61
7
6
24
1.46
13356--13421
34
1.9
34
93
0
114
54
22
10
12
1.68
15117--15146
15
2.0
15
100
0
60
26
0
20
53
1.46
16225--16292
34
2.0
34
88
0
100
41
8
11
38
1.73
16708--16783
40
1.9
40
91
0
125
19
15
28
35
1.93
17772--17838
31
2.2
31
86
0
89
28
13
11
46
1.79
17893--17945
26
2.1
25
82
6
63
26
11
9
52
1.67
27803--27828
2
13.0
2
100
0
52
50
0
0
50
1.00
27937--27982
23
2.0
22
84
12
58
43
0
6
50
1.28
28153--28199
4
11.5
4
82
13
60
70
0
29
0
0.88
28153--28199
9
5.7
9
87
12
66
70
0
29
0
0.88
30731--30784
21
2.6
21
76
5
56
11
31
27
29
1.91
32261--32316
12
4.6
12
80
10
60
39
0
25
35
1.56
37914--37957
22
2.0
22
95
4
81
38
20
9
31
1.84
41247--41292
3
15.3
3
100
0
92
67
0
0
32
0.91
42677--42799
50
2.4
50
91
2
201
34
13
6
45
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42997--43051
16
3.4
16
78
9
67
14
9
38
38
1.78
42990--43065
32
2.4
32
97
0
143
11
10
40
36
1.76
43208--43245
20
1.9
20
84
10
51
31
7
5
55
1.51
43265--43342
16
4.9
16
78
6
77
5
12
32
50
1.63
43265--43342
32
2.4
32
80
4
95
5
12
32
50
1.63
46538--46829
107
2.7
108
89
5
428
37
10
1
50
1.48
62538--62570
6
5.5
6
100
0
66
0
15
15
69
1.19
64088--64116
1
29.0
1
100
0
58
0
0
0
100
0.00
66425--66462
11
3.5
11
85
10
51
57
2
0
39
1.12
66679--66713
16
2.2
16
89
0
52
14
25
5
54
1.62
66947--66976
13
2.3
13
94
0
51
46
0
0
53
1.00
66957--67014
16
3.4
17
79
15
66
43
1
0
55
1.10
67061--67210
77
2.0
76
90
2
239
24
26
14
34
1.94
69758--69995
106
2.2
105
86
6
327
49
23
12
14
1.78
71337--71404
27
2.5
28
85
2
84
22
11
20
45
1.83
71497--71547
24
2.1
24
92
0
84
19
21
9
49
1.77
72210--72285
26
2.9
26
96
0
143
39
15
32
11
1.84
73803--73838
6
6.5
6
81
18
51
16
0
0
83
0.65
73810--73838
15
1.9
15
100
0
58
17
0
0
82
0.66

Tables:   1

The End!