genome.fa.s11692.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011692.1 Corchorus capsularis cultivar CVL-1 contig11713, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108972

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25--97	21	3.4	22	69	14	53	56	6	17	19	1.63
4473--4695	75	3.0	74	78	6	236	39	13	23	23	1.91
4724--4758	2	17.5	2	100	0	70	48	0	0	51	1.00
5835--5867	16	2.1	16	94	0	57	18	9	0	72	1.10
12764--12793	2	15.0	2	92	0	51	53	0	0	46	1.00
12980--13004	2	12.5	2	100	0	50	48	0	0	52	1.00
22743--22780	1	38.0	1	100	0	76	0	0	0	100	0.00
23496--23527	3	10.7	3	100	0	64	31	0	0	68	0.90
23854--23891	15	2.5	15	91	0	58	39	2	7	50	1.46
23885--23966	11	6.7	11	79	20	92	54	9	0	35	1.33
23885--23954	26	2.7	26	100	0	140	54	10	0	35	1.34
23883--23954	15	5.3	15	63	24	52	54	9	0	36	1.34
23886--23966	37	2.2	34	80	20	92	55	9	0	34	1.33
23885--24007	63	2.0	63	87	6	178	55	8	0	34	1.37
23909--23981	37	2.0	36	94	2	128	56	10	0	32	1.34
23894--24012	26	4.5	27	81	14	76	55	9	0	34	1.38
24101--24164	26	2.5	25	85	7	85	68	12	4	14	1.35
24102--24171	24	2.8	25	83	12	83	64	14	7	14	1.48
29073--29108	2	18.0	2	100	0	72	50	0	0	50	1.00
33389--33416	6	4.7	6	100	0	56	17	35	0	46	1.49
35901--35947	22	2.1	23	92	4	78	19	4	2	74	1.09
35926--35963	18	2.1	19	90	5	60	23	0	5	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37190--37270	42	1.9	42	92	0	135	34	23	7	34	1.83
38299--38339	21	2.1	18	86	13	55	24	26	12	36	1.91
38636--38686	19	2.6	19	76	11	50	37	11	17	33	1.86
51119--51151	15	2.2	15	89	10	50	36	0	0	63	0.95
51354--51378	13	1.9	13	100	0	50	40	8	12	40	1.72
53857--53885	2	14.5	2	100	0	58	48	0	0	51	1.00
55740--55827	45	2.0	45	86	0	122	43	22	20	13	1.87
56339--56386	14	3.6	14	72	11	55	29	29	10	31	1.90
56337--56388	26	2.0	26	96	0	95	30	30	9	28	1.89
63880--64148	22	12.5	22	71	12	143	17	20	7	55	1.65
63880--64222	21	16.3	21	68	18	148	17	20	6	55	1.64
63881--64158	43	6.5	43	72	15	150	16	20	6	55	1.64
63880--64111	129	1.8	128	82	6	301	16	20	7	55	1.66
64151--64278	21	5.6	22	69	26	65	19	17	6	57	1.61
64161--64272	50	2.2	49	83	9	136	18	17	5	58	1.58
64218--64292	22	3.5	22	83	7	91	18	17	5	58	1.57
64135--64287	72	2.1	73	81	9	172	18	18	5	57	1.58
64153--64327	93	1.9	92	79	11	196	18	20	5	54	1.63
65276--65533	101	2.5	100	83	5	322	35	15	5	44	1.68
65276--65522	51	4.9	50	74	7	205	36	14	4	44	1.67
65519--65557	20	2.0	20	100	0	78	33	15	15	35	1.89
68016--68085	27	2.6	27	93	0	113	45	22	15	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78554--78625	27	2.7	27	91	4	112	15	11	30	43	1.81
78979--79003	1	25.0	1	100	0	50	100	0	0	0	0.00
86302--86621	165	1.9	166	86	6	452	22	17	5	54	1.63
86614--86926	20	15.1	19	69	18	96	22	21	3	52	1.62
86598--86980	22	18.1	22	75	12	216	21	21	3	53	1.62
86609--86913	104	2.9	104	88	6	417	21	21	3	53	1.62
86709--86981	127	2.1	129	97	2	516	20	21	3	53	1.61
87696--87751	23	2.4	24	90	6	96	19	14	7	58	1.58
87703--87751	23	2.1	23	100	0	98	20	16	8	55	1.66
92137--92220	35	2.4	34	82	5	105	41	15	19	23	1.89
92589--92638	26	1.9	26	87	0	73	44	2	8	46	1.44
93150--93182	11	3.0	11	91	8	50	42	0	3	54	1.15
95666--95704	20	2.0	20	89	0	60	41	20	10	28	1.85
95844--95878	14	2.5	14	95	0	61	48	14	14	22	1.79
96194--96265	27	2.7	27	88	0	99	47	26	12	13	1.79
96745--96814	33	2.1	34	91	5	115	40	8	17	34	1.80
97396--97454	27	2.3	26	88	8	93	35	11	16	35	1.86
97401--97453	27	2.0	27	96	0	97	37	13	16	32	1.88
97483--97533	8	6.4	8	78	17	52	80	0	13	5	0.89
97483--97556	16	4.7	15	75	18	62	79	1	14	4	0.94
97485--97556	22	3.2	23	80	13	87	79	1	15	4	0.96
97499--97556	12	4.6	12	75	10	53	81	1	15	1	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97490--97553	32	2.0	32	87	6	94	78	1	17	3	0.96
97492--97555	11	5.9	10	77	20	58	79	1	15	3	0.93
98588--98732	38	3.7	39	87	4	204	35	19	20	25	1.96
98588--98732	78	1.9	78	89	0	227	35	19	20	25	1.96
98744--98871	38	3.3	38	84	4	166	35	19	17	28	1.94
98644--98832	100	1.9	99	85	4	263	34	19	17	27	1.95
98604--98972	138	2.7	137	88	2	521	35	19	17	27	1.94
98893--99044	38	4.0	39	80	10	163	32	19	18	29	1.96
98906--99044	74	1.9	75	86	1	199	30	20	19	28	1.97
99092--99331	34	6.9	34	89	3	363	34	21	4	39	1.74
99092--99416	85	3.8	85	77	15	328	34	21	4	40	1.73
99315--99419	34	3.0	34	90	5	158	34	20	3	41	1.70
99434--99516	40	2.1	39	84	6	103	25	25	19	30	1.98
100933--101010	30	2.6	30	72	9	88	26	32	28	12	1.93
102043--102079	9	3.8	10	82	17	51	81	2	0	16	0.81
102052--102076	10	2.5	10	100	0	50	92	0	0	8	0.40
102616--102641	12	2.2	12	100	0	52	30	15	7	46	1.74

Tables:   1

The End!