Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011696.1 Corchorus capsularis cultivar CVL-1 contig11717, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39877

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2775--2825
14
3.8
13
82
7
57
41
7
11
39
1.71
3452--3493
11
3.8
11
82
17
52
83
0
16
0
0.65
3452--3487
17
2.1
18
94
5
65
83
0
16
0
0.65
3452--3494
22
2.0
22
90
9
70
83
0
16
0
0.64
5107--5283
54
3.3
54
83
1
203
29
17
20
32
1.96
5286--5585
36
8.4
36
84
7
330
25
17
24
32
1.97
5281--5589
142
2.2
143
87
2
444
25
16
24
32
1.96
5624--6414
91
8.7
91
91
1
1110
25
17
26
31
1.97
6414--6661
67
3.6
68
93
4
394
27
27
17
27
1.98
6799--7129
96
3.5
96
94
0
558
20
26
22
30
1.98
6799--7129
47
7.0
47
90
2
500
20
26
22
30
1.98
6799--7130
143
2.3
143
89
3
506
20
26
22
30
1.98
7185--7223
10
3.9
10
93
0
69
84
15
0
0
0.62
7191--7231
6
6.5
6
83
10
55
85
14
0
0
0.60
7181--7232
20
2.6
19
88
11
77
86
13
0
0
0.57
7181--7232
24
2.2
24
90
6
81
86
13
0
0
0.57
7181--7229
26
2.0
26
92
8
84
85
14
0
0
0.59
16610--16686
32
2.4
32
88
0
109
9
40
40
10
1.71
16627--16693
32
2.1
32
91
0
107
8
37
41
11
1.73
16767--16827
32
1.9
32
86
0
86
14
36
37
11
1.83
16918--16958
21
2.0
21
85
0
55
46
7
19
26
1.76
30231--30268
18
2.1
18
100
0
76
39
23
10
26
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33616--33647
15
2.1
15
100
0
64
6
6
6
81
0.99
38026--38101
5
16.4
5
79
15
92
22
21
0
56
1.42
38035--38059
13
1.9
13
100
0
50
24
16
0
60
1.36

Tables:   1

The End!