Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011699.1 Corchorus capsularis cultivar CVL-1 contig11720, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105593

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
508--537
13
2.2
14
94
5
53
30
6
10
53
1.60
2659--2705
21
2.2
21
100
0
94
42
8
34
14
1.77
3716--3765
26
1.9
26
87
0
73
52
12
20
16
1.75
3716--3772
26
2.2
26
83
0
69
50
14
19
15
1.77
7237--7479
123
2.0
122
97
0
459
26
15
17
40
1.89
11241--11319
41
1.9
41
94
0
140
32
2
7
56
1.41
12105--12475
156
2.4
156
78
8
389
30
14
20
34
1.93
12821--12858
17
2.2
18
90
4
60
23
34
13
28
1.92
17159--17187
2
15.0
2
92
7
51
48
0
0
51
1.00
19471--19499
2
14.5
2
100
0
58
48
0
0
51
1.00
22513--22542
15
2.0
15
93
0
51
20
16
0
63
1.31
22576--22629
15
3.5
15
84
2
72
29
16
1
51
1.55
23029--23149
34
3.5
34
75
14
138
26
17
8
47
1.75
22992--23161
71
2.4
71
90
2
268
25
19
8
47
1.77
23105--23501
55
7.2
55
94
0
632
25
19
7
48
1.74
22943--23161
71
3.1
68
85
4
197
25
18
8
47
1.76
23458--23560
47
2.2
47
100
0
206
29
12
8
49
1.70
23552--23600
26
1.9
26
87
4
73
18
22
8
51
1.72
24390--24633
53
4.8
50
84
9
330
35
13
6
44
1.69
24390--24631
103
2.4
102
92
3
405
35
13
6
44
1.69
28244--28375
32
4.1
31
74
9
104
36
18
23
21
1.95
28515--28680
89
1.9
89
82
5
210
40
13
15
30
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40579--40621
21
2.0
21
100
0
86
27
0
32
39
1.57
40671--40715
16
2.8
16
89
3
72
37
0
6
55
1.26
40674--40722
16
3.1
16
86
13
66
36
0
6
57
1.24
43775--44145
186
2.0
186
95
0
661
31
25
18
23
1.98
48054--48089
17
2.1
17
94
0
63
33
0
13
52
1.41
49146--49197
23
2.5
21
87
12
72
48
13
0
38
1.43
49178--49211
15
2.3
15
94
0
59
47
14
0
38
1.45
49344--49469
65
1.9
65
95
0
225
14
21
13
50
1.76
50646--50707
30
2.1
30
87
6
90
24
40
27
8
1.83
53331--53410
33
2.4
34
85
4
110
27
10
22
40
1.86
56422--56447
13
2.0
13
100
0
52
69
7
0
23
1.14
58125--58238
58
2.0
58
89
0
174
41
9
5
43
1.60
64505--64574
30
2.2
32
83
16
85
60
1
0
38
1.06
69121--69153
15
2.2
15
94
0
57
39
0
3
57
1.14
69259--69328
35
2.0
35
100
0
140
48
8
11
31
1.69
76246--76279
16
2.1
16
100
0
68
47
17
23
11
1.81
79543--79644
32
3.2
31
84
2
105
36
33
10
19
1.87
89243--89345
54
1.9
53
88
7
154
25
9
22
42
1.84
90014--90085
21
3.5
21
70
19
71
62
20
1
15
1.40
90016--90094
41
1.9
41
92
0
131
63
18
3
13
1.45
94193--94239
23
2.0
24
83
8
60
57
19
2
21
1.51
98581--98694
12
9.5
12
71
3
86
17
19
25
37
1.93

Tables:   1

The End!