Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000117.1 Corchorus capsularis cultivar CVL-1 contig00117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26


Found at i:820 original size:18 final size:18

Alignment explanation


    Indices: 799--834  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        789 TTTGATCTTT

                              
        799 TTAAGATACAAAGTTCGA
          1 TTAAGATACAAAGTTCGA

                              
        817 TTAAGATACAAAGTTCGA
          1 TTAAGATACAAAGTTCGA

        835 ACCACACTAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28


Consensus pattern (18 bp):   
TTAAGATACAAAGTTCGA
Done.