Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011700.1 Corchorus capsularis cultivar CVL-1 contig11721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67226

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53--223
33
5.3
33
94
2
285
43
18
11
26
1.84
53--256
66
3.1
66
87
3
236
42
19
11
27
1.85
53--256
99
2.1
96
84
4
257
42
19
11
27
1.85
249--313
33
2.0
33
90
0
103
46
20
9
24
1.79
297--343
23
2.0
24
87
4
69
48
25
4
21
1.68
5416--5735
110
2.9
110
90
0
480
29
6
21
42
1.78
5573--5737
53
3.1
51
67
16
127
29
4
19
46
1.70
9841--9980
69
2.0
69
98
0
271
40
12
28
17
1.87
23068--23105
19
2.0
19
85
10
51
76
5
10
7
1.15
24931--25187
105
2.5
106
87
4
364
42
9
8
39
1.69
38693--38810
41
3.0
41
82
6
136
52
16
8
22
1.70
38765--38789
13
1.9
13
100
0
50
60
24
8
8
1.52
47837--47870
2
17.0
2
93
0
59
47
0
0
52
1.00
49884--49941
16
3.4
17
74
21
59
43
1
1
53
1.21
49888--49914
2
13.5
2
100
0
54
48
0
0
51
1.00
50503--50542
19
2.1
19
85
0
53
52
5
0
42
1.23
52407--52465
21
2.8
22
79
7
68
52
20
11
15
1.73
52428--52657
54
4.3
54
73
14
199
43
22
11
22
1.85
52664--52806
54
2.6
55
79
1
180
46
23
9
21
1.80
52849--52987
53
2.6
53
87
0
197
46
22
9
21
1.79
52719--52985
127
2.1
128
77
8
276
42
22
10
23
1.85
52520--53058
181
3.0
182
85
3
737
42
21
11
24
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53477--53503
14
1.9
14
100
0
54
40
7
0
51
1.30
54834--54922
43
2.1
43
100
0
178
28
15
4
51
1.63
59442--59492
11
4.7
11
74
13
52
1
19
0
78
0.85
59450--59490
21
2.0
21
90
0
64
2
19
0
78
0.87
62253--62313
29
2.1
29
90
0
95
37
21
22
18
1.94
66331--66383
23
2.1
24
83
16
63
43
1
5
49
1.37
66345--66383
11
3.2
12
89
7
53
43
2
2
51
1.29

Tables:   1

The End!