Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011701.1 Corchorus capsularis cultivar CVL-1 contig11722, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74715

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
903--941
6
6.5
6
100
0
78
53
15
0
30
1.42
907--953
18
2.6
18
86
6
51
53
14
4
27
1.60
1871--1896
10
2.6
10
100
0
52
23
7
19
50
1.73
3806--3839
15
2.4
14
90
9
52
79
2
11
5
1.02
4076--4122
21
2.2
22
78
17
55
12
23
46
17
1.82
7687--7747
23
2.7
23
87
2
88
29
14
6
49
1.69
8050--8081
6
5.5
6
96
3
57
56
12
0
31
1.37
8045--8084
18
2.4
16
80
12
53
55
15
5
25
1.60
20864--20889
2
13.0
2
100
0
52
50
0
0
50
1.00
21881--21909
2
14.5
2
100
0
58
48
0
0
51
1.00
22200--22239
20
2.0
20
90
0
62
30
0
5
65
1.14
23550--23582
2
16.5
2
100
0
66
48
0
0
51
1.00
24489--24521
2
16.5
2
100
0
66
48
0
0
51
1.00
25784--25818
13
2.7
13
90
0
52
54
2
0
42
1.15
28128--28158
2
15.5
2
100
0
62
48
0
0
51
1.00
43607--43666
22
2.7
22
89
0
93
16
18
38
26
1.92
46532--46615
42
2.0
42
95
0
150
41
17
10
29
1.84
48878--48959
14
6.0
14
69
22
50
32
1
9
56
1.40
48913--48980
26
2.6
26
84
9
93
33
2
10
52
1.50
48989--49048
25
2.5
25
86
5
88
43
0
21
35
1.53
56107--56138
2
16.0
2
93
0
55
50
3
0
46
1.17
56101--56135
10
3.6
10
92
3
54
51
5
0
42
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57208--57243
3
12.0
3
100
0
72
33
0
0
66
0.92
59517--59631
58
2.0
58
91
0
185
32
8
16
42
1.79
62692--62726
2
17.5
2
93
0
61
51
0
0
48
1.00
62897--63006
57
1.9
58
90
1
177
23
15
18
42
1.88
70611--70641
13
2.5
13
94
5
55
35
16
22
25
1.94
71829--71863
18
1.9
18
88
0
52
34
8
20
37
1.83

Tables:   1

The End!