Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011702.1 Corchorus capsularis cultivar CVL-1 contig11723, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35854

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
323--354
14
2.3
14
94
0
55
90
0
9
0
0.45
6540--6582
12
3.5
12
90
6
68
27
23
13
34
1.93
14301--14325
2
12.5
2
100
0
50
48
0
0
52
1.00
14739--14842
35
2.9
36
81
8
113
41
9
15
33
1.80
14777--14832
17
3.1
18
69
25
55
35
12
17
33
1.88
14857--14905
18
2.7
18
84
6
64
55
4
18
22
1.60
18317--18345
2
14.5
2
100
0
58
48
0
0
51
1.00
23273--23601
175
1.9
175
92
1
552
26
11
14
46
1.79
25666--25731
31
2.1
31
88
5
98
27
19
4
48
1.68
26038--26075
19
2.0
20
85
15
53
28
5
2
63
1.30
26174--26254
22
3.6
22
75
9
74
33
11
18
37
1.86
26297--26436
44
3.2
44
75
12
112
36
8
17
37
1.81
26297--26436
22
6.4
21
74
13
97
36
8
17
37
1.81
26707--27268
22
25.7
22
68
12
165
38
10
15
35
1.82
29485--29523
19
2.1
18
86
13
53
46
5
0
48
1.24
30429--30459
16
1.9
16
93
0
53
51
0
0
48
1.00
34872--34919
18
2.7
17
75
9
51
58
18
8
14
1.61
35800--35848
25
1.9
26
84
12
66
75
6
2
16
1.09

Tables:   1

The End!