Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011703.1 Corchorus capsularis cultivar CVL-1 contig11724, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8549

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--215
54
3.8
54
90
1
326
28
15
20
35
1.93
1--215
109
2.0
109
93
0
367
28
14
21
34
1.93
172--253
38
2.2
38
90
0
128
28
18
23
30
1.97
210--363
55
2.8
54
92
1
236
27
16
23
31
1.96
118--308
92
2.1
92
88
1
283
28
16
21
32
1.96
63--350
147
2.0
147
90
0
459
28
17
21
32
1.95
210--390
54
3.3
54
86
3
220
28
16
22
33
1.95
380--472
43
2.2
40
83
9
123
22
15
30
32
1.94
479--776
90
3.3
91
81
6
322
25
16
26
31
1.97
1074--1124
26
2.0
26
88
0
75
35
19
7
37
1.81
2900--3172
135
2.0
135
98
0
528
35
28
10
24
1.89
5068--5187
30
3.7
33
83
6
99
51
8
18
21
1.72
5117--5187
30
2.4
30
87
0
115
52
9
14
23
1.71
5229--5350
20
5.9
20
72
11
68
54
4
15
24
1.60
5225--5584
22
16.9
22
73
12
177
51
3
20
23
1.64
5417--5484
20
3.2
20
82
10
82
57
4
17
20
1.57
5229--5585
107
3.4
104
81
9
384
51
3
20
24
1.64
5423--5484
15
4.4
14
76
11
63
58
4
17
19
1.57
5224--5680
42
10.5
43
70
13
213
52
4
19
23
1.64
5616--5668
23
2.4
22
80
3
61
64
3
11
20
1.42
5552--5652
51
2.0
50
82
1
121
54
5
16
22
1.64
5605--5680
22
3.5
21
75
12
73
57
5
14
22
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5689--5772
39
2.2
36
82
10
105
57
3
25
14
1.53
5741--5799
27
2.1
28
93
3
102
57
3
22
16
1.54
5727--6049
54
5.7
51
72
18
182
53
3
23
19
1.60
5747--5836
37
2.4
38
80
10
105
57
2
24
15
1.49
5706--5859
65
2.3
64
85
6
193
55
3
24
16
1.56
5784--6055
27
9.9
27
75
9
221
52
2
24
20
1.60

Tables:   1

The End!