genome.fa.s11704.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011704.1 Corchorus capsularis cultivar CVL-1 contig11725, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58642

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--278	49	5.7	49	91	2	427	21	26	15	35	1.94
262--424	64	2.6	64	85	1	229	25	23	15	35	1.94
5607--5657	26	2.0	26	88	0	75	35	19	7	37	1.81
9650--9682	6	5.7	6	96	3	59	54	12	0	33	1.37
9629--9694	18	3.9	18	73	16	52	59	10	6	24	1.53
11614--11801	35	5.4	34	72	16	129	36	7	16	39	1.77
11645--11684	21	1.9	21	94	0	71	45	0	15	40	1.46
11614--11722	56	1.9	56	92	0	182	37	6	16	39	1.74
11645--11692	21	2.3	21	88	0	69	45	4	12	37	1.61
11673--11764	47	2.0	47	95	0	166	33	6	16	43	1.73
11746--11806	16	3.6	16	70	12	50	40	6	14	37	1.72
11783--11824	21	2.0	21	90	0	66	50	2	11	35	1.52
13601--13940	113	2.8	122	82	10	432	31	15	19	34	1.92
14162--14457	46	6.7	46	75	13	244	26	26	18	29	1.98
14221--14293	38	1.9	37	91	2	119	23	24	19	32	1.97
16146--16170	3	8.3	3	100	0	50	68	32	0	0	0.90
19365--19516	70	2.2	68	81	4	180	30	28	18	22	1.97
24716--24962	113	2.2	115	82	7	290	39	14	13	32	1.86
27087--27295	103	2.0	103	99	0	409	33	32	17	16	1.92
29726--29772	23	2.0	23	91	0	76	23	31	27	17	1.96
42231--42277	20	2.3	21	85	7	69	55	17	4	23	1.59
42308--42349	18	2.3	18	95	0	75	66	11	0	21	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43864--43936	24	3.1	24	88	3	105	13	16	23	46	1.82
47494--47625	12	11.0	12	84	3	140	18	31	3	45	1.68
48798--48833	16	2.2	16	90	0	54	5	8	0	86	0.72
55689--55713	12	2.1	12	100	0	50	0	24	36	40	1.55
56734--56795	32	2.0	32	81	9	76	22	12	14	50	1.77
57599--57637	6	6.5	6	93	0	69	46	33	2	17	1.62
57636--57826	38	5.0	38	92	0	292	19	35	20	24	1.96

Tables:   1

The End!