Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011707.1 Corchorus capsularis cultivar CVL-1 contig11728, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44593

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--31
2
15.5
2
100
0
62
51
0
0
48
1.00
3086--3135
25
2.0
25
100
0
100
48
0
8
44
1.32
3091--3144
25
2.2
25
86
6
74
53
0
5
40
1.24
11364--11396
6
5.5
6
100
0
66
0
15
36
48
1.45
11800--11826
2
13.5
2
100
0
54
48
0
0
51
1.00
16441--16746
102
3.0
101
85
3
382
34
11
17
35
1.86
24359--24394
19
1.9
18
88
5
54
58
0
2
38
1.13
25143--25221
27
3.1
25
80
8
63
51
2
1
44
1.23
26222--26375
75
2.1
75
96
0
281
18
11
38
31
1.87
26488--26534
21
2.2
21
85
7
60
44
2
0
53
1.12
26879--26939
30
2.0
30
100
0
122
42
21
9
26
1.84
27436--27473
2
19.5
2
94
5
69
52
0
0
47
1.00
32062--32122
30
2.1
30
87
3
88
62
4
14
18
1.49
32484--32514
6
5.0
6
96
4
53
80
0
3
16
0.83
36616--36690
37
2.0
37
86
0
105
26
10
22
40
1.87
39228--39304
40
1.9
40
100
0
154
32
7
20
38
1.81
40468--40758
145
2.0
145
100
0
582
32
10
16
40
1.83
42317--42701
190
2.0
189
95
2
693
30
15
6
48
1.69
42928--43038
58
1.9
58
94
0
195
42
5
26
26
1.76
43647--43740
29
3.1
29
75
18
95
37
30
13
18
1.90

Tables:   1

The End!