Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011708.1 Corchorus capsularis cultivar CVL-1 contig11729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124991

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
839--874
6
6.0
6
100
0
72
83
0
16
0
0.65
32353--32383
5
6.2
5
92
0
53
3
0
54
41
1.16
41480--41541
22
3.0
21
70
21
51
41
17
8
32
1.79
41721--41820
22
4.6
22
80
10
116
35
11
13
41
1.79
45080--45144
22
3.0
22
75
2
69
38
13
10
36
1.80
48952--48991
20
2.0
20
100
0
80
5
15
35
45
1.68
50371--50509
69
2.0
69
91
0
224
25
10
40
23
1.87
56024--56051
14
2.0
14
100
0
56
7
14
21
57
1.61
63016--63585
103
5.6
102
87
4
729
43
10
7
37
1.68
63279--63319
21
2.0
21
85
4
57
46
9
12
31
1.74
65581--65708
57
2.2
57
91
0
202
21
28
10
39
1.86
71727--71800
36
2.1
36
100
0
148
52
13
0
33
1.41
72060--72098
21
1.9
21
94
5
71
35
20
15
28
1.93
82555--82588
2
17.0
2
100
0
68
50
0
0
50
1.00
94493--94595
37
2.8
36
82
10
127
59
12
14
13
1.62
94708--94770
32
2.0
32
84
3
83
53
4
12
28
1.58
105029--105071
20
2.2
20
95
0
77
4
39
6
48
1.51
109816--109854
20
2.0
20
94
0
69
5
38
7
48
1.54
113096--113120
13
1.9
13
100
0
50
8
40
0
52
1.31
115946--116012
32
2.1
32
100
0
134
26
5
28
38
1.80
120666--120782
59
2.0
59
86
0
162
33
16
11
38
1.85
123510--123578
31
2.2
31
86
0
93
47
5
17
28
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124360--124443
32
2.6
32
86
5
107
19
9
33
38
1.84
124360--124461
32
3.2
32
81
6
91
18
9
34
37
1.84
124784--124894
33
3.4
33
79
2
134
12
34
36
16
1.86
124803--124909
32
3.3
32
80
2
124
13
36
37
13
1.83
124784--124924
32
4.3
32
79
3
111
11
33
39
15
1.83
124929--124973
22
2.0
22
87
8
65
51
0
2
46
1.13

Tables:   1

The End!