Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011715.1 Corchorus capsularis cultivar CVL-1 contig11736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31369

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4597--4674
26
2.9
26
90
3
120
47
2
0
50
1.15
12832--12901
15
4.3
15
76
16
68
38
0
28
32
1.57
16201--16225
13
1.9
13
100
0
50
44
0
32
24
1.54
17685--17727
13
3.2
13
81
15
52
32
0
6
60
1.23
20046--20090
19
2.4
19
85
10
58
62
13
0
24
1.31
21320--21356
2
18.5
2
89
10
58
48
2
0
48
1.15
21391--21449
26
2.3
26
80
8
68
5
25
1
67
1.20
23561--23834
108
2.5
109
89
5
419
39
10
1
48
1.49
25664--25712
24
2.0
24
100
0
98
42
28
4
24
1.73
28329--28367
14
2.6
14
88
8
51
48
35
5
10
1.59
29118--29234
7
16.9
7
68
15
64
18
23
2
55
1.55
29094--29198
34
3.0
34
87
4
156
19
21
2
56
1.55
29154--29237
27
3.0
28
75
13
93
20
22
3
53
1.61
29104--29237
34
3.8
35
85
4
112
20
20
3
54
1.60
29154--29233
13
5.8
13
76
5
61
20
23
2
53
1.57
29302--29524
26
8.4
26
75
14
197
17
19
8
55
1.66
29345--29440
12
7.0
15
64
31
63
15
20
8
55
1.66
29312--29521
53
3.9
53
92
1
348
16
19
8
56
1.64
29312--29521
107
2.0
107
93
1
359
16
19
8
56
1.64
29514--29544
7
4.6
7
96
4
55
29
16
9
45
1.79
29511--29694
56
3.4
56
89
3
268
25
17
7
49
1.73
29621--29650
15
1.9
16
93
6
53
30
13
6
50
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30651--30679
10
2.7
11
94
5
51
31
27
0
41
1.56

Tables:   1

The End!