Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011717.1 Corchorus capsularis cultivar CVL-1 contig11738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29864

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
214--650
125
3.3
125
67
22
348
50
5
11
33
1.60
174--724
275
2.0
275
98
0
1066
49
5
11
33
1.61
1527--1590
29
2.2
30
94
5
114
46
0
18
34
1.49
1580--1630
26
1.9
26
88
11
77
50
0
7
41
1.31
1710--1803
27
3.5
26
83
11
86
48
1
12
37
1.48
2065--2105
4
10.5
4
87
12
59
48
0
21
29
1.50
2060--2098
18
2.1
19
90
4
62
48
0
17
33
1.48
4863--4904
19
2.1
21
86
8
61
42
14
0
42
1.45
11815--11858
5
9.0
5
80
5
54
72
2
22
2
1.07
13197--13263
32
2.1
32
88
5
100
29
7
25
37
1.83
17661--17785
58
2.2
58
97
0
232
44
6
29
19
1.75
21945--21984
3
13.3
3
100
0
80
32
0
0
67
0.91
22026--22100
31
2.4
30
84
13
89
32
14
4
49
1.62
22013--22324
155
2.0
156
91
3
513
33
13
5
47
1.66
22188--22245
30
1.9
31
92
3
100
32
15
3
48
1.62
22188--22253
30
2.1
31
88
5
98
33
15
4
46
1.66
26600--26654
2
27.5
2
100
0
110
50
49
0
0
1.00
27016--27066
7
7.1
7
91
8
77
80
0
17
1
0.81
27086--27231
44
3.2
44
82
7
175
33
6
21
38
1.80
27563--27591
12
2.4
12
100
0
58
86
0
6
6
0.72
27936--27995
17
3.3
18
77
13
70
80
0
18
1
0.80
27951--27993
5
8.6
5
80
10
52
81
0
16
2
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29032--29088
29
2.0
29
92
0
96
24
19
17
38
1.93
29063--29197
35
3.9
35
86
1
164
16
20
22
40
1.91
29158--29531
119
3.1
119
94
0
640
21
20
22
36
1.96
29256--29351
49
2.0
49
91
4
158
20
19
23
35
1.96
29380--29475
49
2.0
49
91
0
156
19
18
26
35
1.95
29555--29624
34
2.1
34
84
10
90
20
15
24
40
1.91

Tables:   1

The End!