genome.fa.s11725.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011725.1 Corchorus capsularis cultivar CVL-1 contig11746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26372

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3986--4192	87	2.4	86	77	8	222	36	24	8	30	1.85
9885--9931	13	3.5	13	75	16	51	12	23	0	63	1.28
9992--10171	21	8.8	21	75	15	146	22	20	5	52	1.67
10089--10172	22	3.8	22	78	6	98	21	17	3	57	1.55
10097--10160	15	4.3	15	70	18	62	21	21	1	54	1.53
10548--10594	13	3.5	13	75	16	51	12	23	0	63	1.28
10655--10755	21	4.8	21	79	8	91	22	20	5	50	1.70
10667--10835	44	4.1	43	77	15	133	21	19	5	53	1.64
10654--10829	21	8.6	21	74	14	82	22	20	5	51	1.68
9505--10835	663	2.0	662	98	0	2563	23	21	10	44	1.83
10752--10829	22	3.5	22	81	6	104	21	19	5	53	1.64
10772--10949	29	6.8	26	73	20	115	16	23	3	55	1.58
10794--10964	56	3.2	53	79	11	156	16	22	4	57	1.56
10818--10964	29	5.3	28	77	11	135	15	23	4	57	1.56
10818--10975	83	1.9	83	81	10	189	16	22	3	56	1.56
10810--10986	83	2.1	83	75	16	179	15	22	3	58	1.52
10818--10986	27	6.1	26	73	17	94	15	21	3	58	1.53
10818--10988	56	3.1	54	75	17	129	15	21	3	59	1.52
11019--11138	29	3.6	34	76	19	126	22	21	1	54	1.54
11046--11142	22	4.4	22	69	22	69	20	22	2	54	1.55
11166--11548	40	10.1	40	67	17	165	21	22	4	51	1.65
11195--11459	72	3.6	70	77	11	205	21	21	3	53	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11335--11530	79	2.5	79	85	2	252	23	20	4	51	1.65
11533--11924	32	12.2	32	88	1	541	18	23	3	53	1.60
11533--11936	97	4.2	97	86	1	542	18	24	3	54	1.59
11929--12074	51	2.9	49	76	8	141	28	18	7	45	1.76
12837--12983	76	1.9	76	97	0	276	21	39	11	27	1.88
20625--20651	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1

The End!