Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011726.1 Corchorus capsularis cultivar CVL-1 contig11747, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15655
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:14636 original size:25 final size:25

Alignment explanation


    Indices: 14581--14638  Score: 73
    Period size: 25  Copynumber: 2.4  Consensus size: 25

      14571 CAAGGAGACT

                                     
      14581 ATTTTTTTGTAGTTTTCAATTTTCC
          1 ATTTTTTTGTAGTTTTCAATTTTCC

             *         *    *       *
      14606 AATTTTTTGTATTTTTTAA-TTTCT
          1 ATTTTTTTGTAGTTTTCAATTTTCC

                     
      14630 ATTTTTTTG
          1 ATTTTTTTG

      14639 GTTTATGTAG


Statistics
Matches: 28,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  24   12  0.43
  25   16  0.57

ACGTcount: A:0.17, C:0.07, G:0.07, T:0.69


Consensus pattern (25 bp):   
ATTTTTTTGTAGTTTTCAATTTTCC
Done.