Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011729.1 Corchorus capsularis cultivar CVL-1 contig11750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72843

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3110--3534
177
2.4
178
81
3
462
35
15
14
35
1.87
3665--4028
179
2.0
179
98
0
710
42
10
12
34
1.78
4119--4197
29
2.7
28
71
15
70
22
22
12
41
1.88
5625--5772
22
6.8
22
73
11
117
37
12
11
39
1.79
5733--5785
21
2.6
20
79
8
54
26
18
7
47
1.75
7690--7720
2
15.5
2
100
0
62
51
0
0
48
1.00
8410--8653
123
2.0
123
86
1
346
37
9
13
38
1.79
10293--10356
30
2.1
30
91
5
103
40
12
12
34
1.81
11532--11578
25
1.9
24
91
4
76
61
12
4
21
1.48
12424--12468
21
2.1
21
95
4
81
37
8
15
37
1.79
14060--14113
28
1.9
28
92
0
90
37
0
11
51
1.37
14227--14269
21
2.0
21
86
9
59
51
0
2
46
1.13
15228--15270
22
2.0
22
90
0
68
39
6
4
48
1.51
15545--15787
121
2.0
121
99
0
477
39
11
7
40
1.71
20411--20456
21
2.1
22
88
4
67
13
39
8
39
1.75
20613--20640
7
4.0
7
100
0
56
28
0
0
71
0.86
20709--20770
11
4.7
14
69
27
55
32
1
9
56
1.41
20709--20776
26
2.6
26
86
9
102
33
1
10
54
1.43
20785--20844
25
2.5
25
86
5
79
43
0
20
36
1.52
25588--25624
7
5.1
7
93
3
56
83
0
13
2
0.74
31609--31672
27
2.4
28
78
7
78
31
34
6
28
1.82
35823--35850
3
9.3
3
100
0
56
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35946--35987
12
3.8
12
75
18
54
21
23
33
21
1.97
35943--35984
21
2.0
21
100
0
84
23
19
33
23
1.97
36977--37019
16
2.6
16
88
3
59
37
0
11
51
1.39
42961--42993
7
4.7
7
96
0
57
87
9
0
3
0.63
43114--43205
46
2.0
47
89
4
141
40
14
9
35
1.79
45045--45253
105
2.0
105
86
0
292
31
13
26
29
1.94
52507--52564
21
3.0
20
77
12
66
37
1
6
53
1.38
52559--52607
15
3.6
15
74
23
54
30
0
12
57
1.36
54475--54516
18
2.3
18
91
4
66
16
9
33
40
1.81
56365--56439
32
2.3
32
88
6
107
44
6
5
44
1.53
57615--57669
27
2.0
27
96
0
101
27
10
40
21
1.87
57951--57993
15
2.9
15
96
0
77
60
6
4
27
1.43
58048--58093
22
2.0
23
87
4
67
56
8
2
32
1.42
58069--58140
15
4.9
15
72
16
60
58
11
2
27
1.46
58116--58193
26
2.9
28
75
11
83
55
10
1
33
1.42
58128--58199
18
4.1
18
67
18
53
55
8
1
34
1.39
58425--58483
24
2.5
24
86
2
84
38
0
25
35
1.56
58553--58597
21
2.1
22
91
4
74
31
8
42
17
1.80
59296--59373
40
2.0
40
89
0
120
33
17
20
28
1.96
64147--64583
210
2.1
209
85
2
581
32
16
24
26
1.96
65822--65861
6
6.7
6
88
0
62
35
22
10
32
1.87
65822--65862
12
3.4
12
96
0
73
34
24
9
31
1.88

Tables:   1

The End!