Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011734.1 Corchorus capsularis cultivar CVL-1 contig11755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15683
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33


Found at i:1428 original size:2 final size:2

Alignment explanation


    Indices: 1421--1452  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       1411 TTGTTAAAAC

                                                           
       1421 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1453 CGTTTTAATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:9126 original size:11 final size:10

Alignment explanation


    Indices: 9110--9153  Score: 52
    Period size: 11  Copynumber: 4.2  Consensus size: 10

       9100 TTCTTGCGTC

                       
       9110 TTTTTCTTGGT
          1 TTTTTCTT-GT

                     *
       9121 TTTTTCTTGA
          1 TTTTTCTTGT

                *     
       9131 TTTTCCTTGT
          1 TTTTTCTTGT

                       
       9141 TTTTTCCTTGT
          1 TTTTT-CTTGT

              
       9152 TT
          1 TT

       9154 GTTTTTCGAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  10   13  0.46
  11   15  0.54

ACGTcount: A:0.02, C:0.14, G:0.11, T:0.73


Consensus pattern (10 bp):   
TTTTTCTTGT
Done.