Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011739.1 Corchorus capsularis cultivar CVL-1 contig11760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2541
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:366 original size:2 final size:2

Alignment explanation


    Indices: 359--401  Score: 77
    Period size: 2  Copynumber: 21.5  Consensus size: 2

        349 TGGTTCTCCT

                                                    *                     
        359 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

             
        401 T
          1 T

        402 GTTTTGTTTT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51


Consensus pattern (2 bp):   
TA

Done.