Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011741.1 Corchorus capsularis cultivar CVL-1 contig11762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78490

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10023--10558
268
2.0
269
85
5
737
32
17
16
33
1.92
11422--11456
18
1.9
18
88
0
52
34
8
2
54
1.46
12105--12135
12
2.6
12
94
0
53
54
9
0
35
1.33
13397--13493
31
3.1
31
90
3
149
28
12
22
36
1.91
16178--16510
158
2.1
157
87
2
463
24
23
15
36
1.94
23652--23724
36
2.0
36
94
0
128
46
9
8
35
1.66
23947--23973
14
1.9
14
100
0
54
22
11
0
66
1.22
28833--28880
2
24.5
2
91
4
80
47
2
0
50
1.12
30940--30977
2
19.0
2
94
0
67
52
0
0
47
1.00
41246--41575
134
2.6
125
89
7
518
22
10
35
32
1.87
50960--51007
25
1.9
25
86
0
69
29
16
2
52
1.56
54518--54545
2
14.0
2
100
0
56
50
0
0
50
1.00
55507--55531
2
12.5
2
100
0
50
52
0
0
48
1.00
65699--65806
53
2.0
53
96
0
198
25
42
7
25
1.80
70790--70828
15
2.5
16
84
16
55
48
0
0
51
1.00
71146--74467
323
10.4
321
84
4
4195
32
14
18
34
1.91
71146--74467
635
5.2
634
86
4
4066
32
14
18
34
1.91
71156--74467
957
3.5
951
87
4
4519
32
14
18
34
1.91
74240--74683
216
2.0
216
86
3
602
34
11
18
35
1.86
75535--75559
10
2.5
10
100
0
50
48
20
8
24
1.76
76513--76545
6
5.5
6
92
7
50
27
0
15
57
1.38
76751--78490
322
5.4
322
85
3
2377
33
14
17
34
1.91

Tables:   1

The End!