Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011748.1 Corchorus capsularis cultivar CVL-1 contig11769, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46765

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--91
31
2.3
31
82
0
99
19
20
26
33
1.97
41--143
53
1.9
53
86
0
143
18
20
25
35
1.95
609--684
29
2.6
29
82
2
98
21
23
14
40
1.90
750--821
29
2.4
30
79
9
94
37
18
26
18
1.93
8767--8804
11
3.5
11
85
10
51
57
2
0
39
1.12
10316--10350
4
8.8
4
100
0
70
77
0
0
22
0.78
28075--28129
28
2.0
28
82
7
67
29
12
7
50
1.67
32366--32472
31
3.5
31
65
12
78
22
28
22
27
1.99
32356--32541
60
3.1
60
85
0
219
22
25
19
32
1.97
32397--32548
29
5.1
29
68
6
106
22
25
20
32
1.98
32480--32581
31
3.4
31
71
5
109
23
26
16
33
1.96
32450--32587
60
2.3
60
94
1
242
22
26
16
34
1.95
32467--32565
29
3.3
29
70
5
90
21
23
15
40
1.90
39906--40012
31
3.5
31
85
0
106
19
20
22
37
1.94
39893--40043
62
2.4
62
83
0
158
19
20
23
36
1.95
39933--40055
31
4.0
31
84
0
165
16
21
26
36
1.94
39939--40055
62
1.9
62
90
0
189
16
19
26
37
1.93

Tables:   1

The End!