genome.fa.s11749.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011749.1 Corchorus capsularis cultivar CVL-1 contig11770, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122768

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2876--2907	15	2.1	15	94	0	55	25	0	34	40	1.56
5346--5372	6	4.5	6	100	0	54	0	14	0	85	0.61
12903--12978	29	2.6	29	87	2	107	39	13	25	22	1.90
12902--13002	29	3.4	28	80	10	85	39	13	25	20	1.90
13288--13385	31	3.2	31	91	0	151	33	23	23	19	1.97
15758--15827	21	3.2	21	75	13	70	30	10	7	52	1.61
35770--35836	22	3.0	22	75	16	66	38	5	14	40	1.71
43611--43644	16	2.1	16	88	0	50	2	14	14	67	1.34
51825--51863	6	6.7	6	82	5	53	61	0	0	38	0.96
51825--51868	12	3.7	12	81	6	54	56	2	0	40	1.11
55431--56323	446	2.0	446	96	2	1654	47	4	11	36	1.61
55511--56216	109	6.4	109	72	15	517	47	3	11	37	1.58
66220--66340	62	1.9	63	94	1	217	52	19	3	23	1.61
75695--75740	6	7.7	6	90	0	56	32	13	0	54	1.39
77598--77654	21	2.7	21	88	0	78	35	14	28	22	1.93
77699--77895	78	2.5	79	88	2	288	27	18	25	28	1.98
83439--83488	25	2.0	25	100	0	100	36	20	16	28	1.93
84801--84830	1	30.0	1	100	0	60	0	0	0	100	0.00
100405--100447	21	2.0	21	100	0	86	37	39	13	9	1.78
100499--100573	31	2.6	29	82	6	89	18	21	16	44	1.87
102683--102845	78	2.1	78	91	0	263	28	22	18	30	1.97
103219--103252	16	2.1	16	94	0	59	38	11	26	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112598--112663	31	2.1	32	83	5	82	34	21	10	33	1.88
119012--120514	200	7.5	198	82	5	1698	34	18	13	33	1.90
119015--120516	404	3.7	396	83	6	1760	34	18	13	33	1.90
119015--120389	606	2.3	603	85	5	1801	34	18	13	33	1.90
122257--122287	16	1.9	16	93	0	53	35	6	0	58	1.24

Tables:   1

The End!