Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001175.1 Corchorus capsularis cultivar CVL-1 contig01175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.40


Found at i:8 original size:3 final size:3

Alignment explanation


    Indices: 1--38  Score: 69
    Period size: 3  Copynumber: 13.0  Consensus size: 3

                                                               
          1 AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

         39 GGCAAGATTG


Statistics
Matches: 34,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2    2  0.06
   3   32  0.94

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (3 bp):   
AAT

Done.