genome.fa.s11750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011750.1 Corchorus capsularis cultivar CVL-1 contig11771, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124499

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6513--6792	75	3.7	74	85	4	352	27	23	18	30	1.98
6513--6791	150	1.9	148	86	7	402	27	23	18	30	1.98
15065--15103	20	2.0	20	84	0	51	53	0	41	5	1.23
19818--19882	14	5.0	14	69	16	59	15	0	30	53	1.42
19829--19893	21	3.3	21	70	16	75	15	0	35	49	1.45
19837--19898	18	3.3	18	70	16	63	16	0	32	51	1.44
19823--19898	38	2.0	38	100	0	152	15	0	31	52	1.43
20074--20112	20	2.0	20	84	0	51	53	0	41	5	1.23
21144--21173	15	2.0	15	93	0	51	30	6	36	26	1.82
24393--24428	10	3.6	10	92	0	63	50	0	11	38	1.38
30282--30323	21	2.0	21	100	0	84	42	33	0	23	1.55
32606--32846	120	2.0	120	91	1	394	39	12	21	27	1.89
32726--32992	142	1.9	140	92	3	417	40	12	20	26	1.88
33125--33168	19	2.3	20	88	11	74	56	4	13	25	1.56
34541--34572	15	2.1	15	100	0	64	21	18	6	53	1.67
35743--35786	18	2.4	18	96	0	79	25	25	18	31	1.97
40220--40284	31	2.1	31	82	0	76	44	4	18	32	1.70
40963--41009	23	2.0	23	91	0	76	34	10	14	40	1.81
43500--46168	325	8.2	320	80	7	2784	35	16	14	33	1.89
43438--46168	981	2.8	977	89	3	4104	35	16	14	33	1.89
46011--46316	149	2.0	151	83	5	388	34	16	12	35	1.87
48199--48602	166	2.4	165	86	3	553	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50867--50939	30	2.5	29	79	2	83	17	27	13	41	1.88
50867--50938	29	2.5	28	75	8	72	18	26	13	41	1.87
51131--51203	30	2.4	31	84	4	87	41	19	23	16	1.90
53816--53909	45	2.1	44	94	3	163	38	13	7	40	1.73
68205--68263	29	2.1	28	84	6	75	22	8	11	57	1.61
69038--69062	13	1.9	13	100	0	50	48	0	16	36	1.46
71069--71109	2	20.0	2	85	14	57	46	4	0	48	1.23
72929--73014	30	2.9	30	100	0	172	59	15	3	22	1.51
90821--91046	112	2.0	112	88	0	335	37	17	9	35	1.83
102610--102654	21	2.1	21	91	0	72	17	35	11	35	1.86
103024--103099	33	2.3	34	81	6	93	13	40	36	9	1.76
103037--103139	33	3.1	33	84	5	120	10	34	42	11	1.76
103050--103178	33	3.9	34	85	6	158	13	34	39	13	1.83
103050--103178	67	1.9	66	81	7	154	13	34	39	13	1.83
107297--107321	2	12.5	2	100	0	50	52	0	0	48	1.00
108897--108982	33	2.7	31	83	10	111	39	2	16	41	1.61
109356--109420	30	2.1	31	91	2	105	27	18	4	49	1.67
109362--109427	30	2.1	31	88	5	98	31	15	4	48	1.65
109430--109482	19	2.8	19	77	5	54	35	5	1	56	1.34
109530--109616	22	4.0	22	86	5	122	34	13	17	34	1.89
109533--109616	44	1.9	44	95	0	150	34	14	15	35	1.88
109533--109663	44	3.0	43	81	10	140	33	11	16	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109539--109670	22	5.9	22	83	3	102	33	9	18	38	1.83
109709--109839	22	6.0	21	69	12	68	35	10	18	35	1.85
109734--110096	22	16.3	22	68	17	121	39	10	14	34	1.81
109924--109962	21	2.0	19	85	14	53	46	5	7	41	1.55
109884--110096	66	3.2	66	78	7	173	41	10	12	35	1.78
110202--110268	19	3.5	19	87	6	91	46	10	17	25	1.80
110259--110551	22	13.5	22	68	13	110	39	9	13	37	1.77
110259--110466	44	4.9	43	72	14	128	40	9	12	36	1.77
110450--110553	23	4.6	23	79	3	95	38	7	13	40	1.73
110496--110564	22	3.1	22	85	0	75	36	10	14	39	1.80
110602--110657	22	2.5	22	82	2	67	30	12	19	37	1.89
110766--110818	21	2.5	21	87	3	70	39	15	11	33	1.83
112428--112488	32	2.0	30	83	6	77	29	27	13	29	1.94
121360--121421	31	2.0	31	90	0	97	45	4	19	30	1.71
121901--121942	20	2.0	21	86	4	59	38	21	16	23	1.93

Tables:   1

The End!