Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011751.1 Corchorus capsularis cultivar CVL-1 contig11772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40043

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3730--3772
21
2.0
22
95
4
79
41
13
11
32
1.81
3805--3837
1
33.0
1
100
0
66
100
0
0
0
0.00
5892--5962
27
2.6
27
79
4
79
25
9
28
36
1.88
10834--11014
93
1.9
93
87
0
263
25
22
11
40
1.88
11709--11739
2
15.5
2
100
0
62
48
0
0
51
1.00
17262--17287
1
26.0
1
100
0
52
100
0
0
0
0.00
18244--18313
29
2.4
29
87
2
95
17
25
10
47
1.78
22494--22522
13
2.2
13
100
0
58
44
24
0
31
1.54
24458--24500
20
2.2
20
82
0
50
27
9
9
53
1.63
24478--24525
19
2.5
19
80
6
53
33
10
12
43
1.77
24882--24931
14
3.6
14
75
5
57
48
6
12
34
1.65
24881--24932
27
1.9
27
92
0
86
46
5
11
36
1.64
25227--25268
19
2.2
19
100
0
84
45
16
4
33
1.69
27760--27834
23
3.2
23
92
1
123
14
13
26
45
1.82
29839--30200
181
2.0
179
90
1
571
35
10
2
50
1.52
30448--30508
31
2.0
31
93
0
104
29
14
13
42
1.84
39642--39719
29
2.7
29
79
2
102
17
28
16
37
1.92
39865--39944
29
2.7
29
84
7
99
45
13
21
20
1.85

Tables:   1

The End!