genome.fa.s11753.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011753.1 Corchorus capsularis cultivar CVL-1 contig11774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159131

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375--1411	19	1.9	19	88	0	56	32	16	10	40	1.83
2356--2393	5	8.0	5	88	5	53	2	15	0	81	0.80
4044--4295	103	2.4	103	95	0	450	37	23	14	25	1.92
5142--5203	21	2.9	22	76	7	74	33	9	14	41	1.79
24968--25037	32	2.2	32	86	0	95	18	25	22	32	1.97
31287--31384	30	3.3	30	88	5	146	41	20	19	18	1.90
33484--33527	19	2.4	19	85	7	56	34	4	52	9	1.54
38721--38862	70	2.0	70	100	0	284	12	23	8	54	1.65
39101--39171	36	2.0	36	100	0	142	19	21	14	45	1.85
39970--40044	38	1.9	39	94	2	134	25	13	9	52	1.70
46692--47058	183	2.0	183	100	0	734	32	16	15	35	1.90
54227--54340	57	2.0	57	100	0	228	29	15	21	33	1.94
55995--56895	174	5.2	174	95	0	1576	30	21	12	34	1.91
58936--59017	31	2.6	31	78	3	94	25	25	28	20	1.99
63481--63561	15	5.2	15	69	8	63	20	38	11	29	1.88
67194--67224	15	2.1	15	100	0	62	19	25	25	29	1.99
67387--67485	31	3.2	33	80	11	102	20	20	26	33	1.97
73383--73422	21	1.9	21	85	10	55	72	7	10	10	1.28
85657--85783	63	2.0	64	96	1	238	26	7	20	45	1.76
87585--87653	30	2.3	29	82	2	84	24	13	26	36	1.92
87706--87732	3	9.0	3	100	0	54	66	0	0	33	0.92
88160--88434	109	2.5	109	91	4	428	38	10	1	49	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89659--89685	1	27.0	1	100	0	54	100	0	0	0	0.00
91037--91118	41	2.0	40	95	2	146	42	4	4	47	1.46
91048--91114	14	4.9	14	70	3	55	44	5	5	43	1.53
91430--91467	11	3.5	11	89	10	51	39	0	2	57	1.12
95577--95725	75	2.0	75	94	0	262	31	10	13	44	1.77
103847--104026	89	2.0	89	97	0	342	42	11	7	38	1.69
104194--106200	334	6.1	333	76	9	1608	33	13	16	36	1.88
104211--105983	658	2.7	654	82	5	2026	34	12	16	36	1.87
105845--106609	380	2.0	380	92	1	1266	33	13	15	36	1.88
111589--111620	6	5.3	6	100	0	64	34	31	0	34	1.58
124331--124355	2	12.5	2	100	0	50	52	0	0	48	1.00
124947--126111	334	3.4	330	77	9	957	36	15	12	35	1.85
126522--126558	19	2.0	19	89	5	58	64	0	0	35	0.94
127792--127821	2	15.0	2	92	0	51	46	0	3	50	1.18
128271--128310	6	6.7	6	94	0	71	17	30	0	52	1.45
128330--128369	6	6.7	6	82	0	53	5	37	12	45	1.64
128336--128387	12	4.3	12	85	0	59	9	42	7	40	1.66
128342--128381	18	2.2	18	86	0	53	10	42	7	40	1.67
142105--142144	1	40.0	1	94	0	71	97	0	2	0	0.17
145738--145794	29	2.0	29	96	0	105	22	21	15	40	1.91
146487--146567	29	2.7	29	86	3	108	40	13	20	24	1.89
148646--148701	29	2.0	29	92	3	96	44	1	12	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156520--156563	21	2.0	22	86	4	63	45	22	13	18	1.84
156817--156871	23	2.3	24	96	3	103	63	18	0	18	1.31

Tables:   1

The End!