Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011756.1 Corchorus capsularis cultivar CVL-1 contig11777, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58059

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1577--1612
18
2.0
18
100
0
72
33
22
22
22
1.97
13279--13357
27
2.9
27
100
0
158
44
22
0
32
1.53
13726--13772
24
2.0
24
95
0
85
19
10
63
6
1.47
13741--13796
27
2.1
27
82
0
67
21
5
66
7
1.37
14589--14622
17
2.0
17
94
0
59
50
38
5
5
1.51
17095--17126
16
2.0
16
100
0
64
37
12
12
37
1.81
17321--17449
64
2.0
64
100
0
258
23
20
13
41
1.88
20665--20716
25
2.1
25
96
0
95
42
11
1
44
1.51
27765--27794
15
2.1
14
93
6
51
13
3
20
63
1.43
35543--35569
2
13.5
2
100
0
54
0
48
0
51
1.00
38587--38613
1
27.0
1
100
0
54
100
0
0
0
0.00
39978--40049
32
2.2
32
82
4
92
38
31
9
19
1.84
40041--40087
23
2.0
23
84
8
60
42
34
12
10
1.78
40108--40134
11
2.5
11
100
0
54
18
51
14
14
1.76
41593--41640
22
2.3
20
86
10
62
39
25
16
18
1.91
41560--41662
53
1.9
53
90
0
161
35
27
20
16
1.94
41612--41683
31
2.3
31
85
0
108
33
27
20
18
1.96
44925--44953
2
14.5
2
100
0
58
51
0
0
48
1.00
45010--45192
65
2.8
65
89
0
269
30
13
16
38
1.88
50066--50099
18
1.9
17
94
5
59
38
5
0
55
1.24
50589--50637
25
2.0
25
91
0
80
40
4
16
38
1.67
52071--52122
23
2.4
22
80
6
61
63
0
9
26
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53148--53187
21
2.0
20
85
5
53
5
37
2
55
1.35
53825--53928
54
1.9
54
94
0
181
33
10
10
45
1.73
54107--54233
63
2.0
63
98
0
245
31
11
14
43
1.80
54614--54668
22
2.5
21
72
18
58
21
9
3
65
1.37
55830--55884
22
2.5
21
72
18
58
21
9
3
65
1.37

Tables:   1

The End!