genome.fa.s11758.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011758.1 Corchorus capsularis cultivar CVL-1 contig11779, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128464

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058--1200	22	6.6	22	70	13	100	41	9	13	34	1.78
1159--1195	19	1.9	19	100	0	74	48	8	16	27	1.74
1328--1386	22	2.7	22	83	0	73	38	11	6	42	1.68
1354--1423	22	3.2	21	71	15	61	47	8	14	30	1.74
1353--1436	44	1.9	44	87	4	125	46	9	16	27	1.78
1451--1492	22	1.9	22	85	0	57	45	4	11	38	1.62
1475--1556	25	3.5	23	76	12	78	40	7	12	40	1.70
1476--1546	25	2.9	25	80	12	85	40	5	14	39	1.69
1719--1816	49	2.0	49	95	0	178	25	15	19	39	1.91
1948--1992	3	15.0	3	95	0	81	64	0	35	0	0.94
2012--2043	16	2.0	16	93	0	55	12	9	9	68	1.39
2238--2408	59	2.9	59	95	0	306	24	22	18	34	1.96
3853--3902	23	2.3	21	82	6	55	62	4	12	22	1.46
3845--3894	23	2.1	25	88	7	77	62	2	10	26	1.38
4345--4387	21	2.0	21	100	0	86	67	0	4	27	1.10
5401--5431	16	2.0	15	93	6	53	12	35	38	12	1.82
6388--6421	15	2.3	15	90	10	52	26	5	5	61	1.42
7246--7294	24	2.0	24	100	0	98	42	16	8	32	1.77
8031--8120	28	3.2	28	87	1	117	56	2	5	35	1.35
8449--8549	28	3.6	28	82	1	112	51	6	25	15	1.69
9506--9549	21	2.1	21	100	0	88	65	0	4	29	1.12
9860--9908	24	2.0	24	92	0	80	40	14	8	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10651--10740	28	3.2	28	90	1	126	57	2	5	34	1.34
10670--10704	18	2.0	18	88	5	54	60	0	5	34	1.21
11089--11149	30	2.0	31	83	6	79	47	9	27	14	1.76
11619--11670	23	2.2	25	89	6	81	61	1	9	26	1.38
12119--12162	21	2.1	21	95	0	79	63	0	4	31	1.14
12487--12535	24	2.0	24	100	0	98	42	16	8	32	1.77
14640--14701	28	2.2	27	83	8	79	59	1	6	32	1.32
14654--14687	17	2.0	17	88	11	52	61	0	5	32	1.20
14647--14723	28	2.7	28	89	2	109	61	1	6	31	1.30
14671--14730	28	2.1	28	84	0	75	63	3	5	28	1.31
15069--15127	27	2.2	27	93	0	100	50	8	25	15	1.71
15093--15167	35	2.2	34	86	9	109	56	6	22	14	1.62
15231--15321	44	2.0	46	91	6	150	18	6	17	57	1.61
15585--15634	25	2.0	26	84	4	66	38	18	16	28	1.91
16507--18769	902	2.5	900	98	0	4323	25	11	27	35	1.90
18445--18495	27	1.9	25	84	11	66	7	1	35	54	1.40
20402--20543	31	4.5	31	78	6	133	17	22	28	30	1.97
20936--20991	26	2.2	25	80	3	67	73	12	5	8	1.24
35312--35368	17	3.4	17	90	4	89	28	1	0	70	0.98
40391--40469	30	2.6	30	85	0	95	32	31	10	25	1.89
40719--40779	12	4.8	13	76	13	56	21	36	11	31	1.89
40720--40762	21	2.0	21	86	8	61	23	32	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40741--40785	6	7.5	6	87	0	63	20	35	15	28	1.93
41668--41705	2	19.0	2	94	0	58	0	44	5	50	1.24
45145--45185	22	2.0	22	90	9	68	46	9	9	34	1.70
53378--53414	1	37.0	1	94	0	56	0	5	0	94	0.30
61770--61850	42	1.9	42	92	0	135	37	9	20	32	1.86
62945--63040	44	2.2	44	98	0	183	36	18	14	30	1.91
63882--63912	16	1.9	16	93	0	53	67	6	9	16	1.39
76591--76620	10	3.0	10	100	0	60	0	10	0	90	0.47
77837--77988	74	2.1	74	91	2	243	40	8	28	22	1.83
82520--82597	31	2.6	29	83	4	84	23	24	11	41	1.87
82540--82598	29	2.0	31	86	6	86	25	27	10	37	1.88
82667--82727	29	2.1	30	81	6	72	47	13	19	19	1.82
89608--89637	12	2.5	12	100	0	60	53	6	0	40	1.27
94496--94540	23	2.0	23	100	0	90	13	13	22	51	1.75
95287--95341	28	1.9	29	82	10	69	50	1	18	29	1.57
95298--95356	28	2.1	28	87	6	84	50	3	15	30	1.60
103091--103119	2	14.5	2	100	0	58	51	0	0	48	1.00
108330--108363	6	6.0	6	86	13	54	85	0	14	0	0.60
108330--108363	11	3.0	11	91	4	50	85	0	14	0	0.60
112483--112539	26	2.2	25	87	9	80	42	5	14	38	1.68
119076--119133	30	1.9	31	92	3	100	34	15	3	46	1.63
119076--119140	30	2.1	31	88	5	96	35	13	4	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119934--119972	18	2.2	18	100	0	78	41	0	23	35	1.55
120289--120393	22	4.8	22	81	4	106	42	9	14	33	1.78
120499--120662	44	3.7	44	70	18	126	42	9	14	34	1.78
120519--120601	22	3.7	22	79	12	73	38	9	12	39	1.75
120587--120946	22	16.5	22	68	10	105	37	10	16	36	1.83
120819--120907	45	2.0	45	82	4	108	32	11	15	40	1.83
121005--121182	22	8.5	22	69	22	114	43	9	14	33	1.77
121021--121182	62	2.6	62	94	0	279	43	9	12	33	1.76
122192--122230	20	2.0	20	85	10	53	28	5	2	64	1.28
122396--122625	22	10.5	22	73	12	170	36	9	18	36	1.82
122393--123456	66	16.3	65	69	16	394	38	8	17	35	1.81
122628--123043	22	18.8	22	73	11	172	39	9	16	34	1.81
122715--123635	44	21.4	44	68	16	256	38	9	16	36	1.80
123166--123221	22	2.5	22	100	0	112	35	10	7	46	1.66
123226--123456	22	10.7	22	70	12	97	38	8	17	35	1.80
123271--123385	60	1.9	61	87	1	169	40	6	17	34	1.76
123426--123476	22	2.3	23	83	13	70	37	11	13	37	1.82
123575--123730	22	7.1	22	65	9	68	42	10	14	33	1.79
123691--123738	22	2.2	22	84	0	60	50	8	12	29	1.69
125701--125729	14	2.1	14	100	0	58	44	20	13	20	1.85
127258--127390	31	4.3	31	80	1	131	34	26	21	18	1.96

Tables:   1

The End!