Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001176.1 Corchorus capsularis cultivar CVL-1 contig01176, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2582
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:945 original size:12 final size:12

Alignment explanation


    Indices: 928--957  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        918 ATTTCCTTAA

                      * 
        928 AATTTTGTGATT
          1 AATTTTGTGAAT

                        
        940 AATTTTGTGAAT
          1 AATTTTGTGAAT

                  
        952 AATTTT
          1 AATTTT

        958 TTTTATCACA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57


Consensus pattern (12 bp):   
AATTTTGTGAAT
Done.