Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011765.1 Corchorus capsularis cultivar CVL-1 contig11786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24510

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55--89
6
5.8
6
96
0
52
51
8
0
40
1.33
47--90
12
3.7
12
87
0
61
50
11
0
38
1.39
6370--6407
3
12.7
3
100
0
76
34
31
0
34
1.58
6644--6679
18
2.0
18
88
0
54
38
16
36
8
1.79
6653--6715
24
2.8
21
77
15
72
42
15
34
6
1.73
6660--6708
24
2.0
24
92
0
80
42
16
34
6
1.73
21991--22159
31
5.6
30
70
13
123
33
18
20
26
1.96
21995--22157
60
2.7
60
91
0
254
34
19
20
25
1.96
22026--22127
29
3.4
29
74
10
98
32
17
21
28
1.96
21995--22136
29
4.7
30
69
14
87
32
18
21
27
1.97
22185--22293
32
3.4
32
96
1
193
19
15
17
47
1.82
22252--22412
60
2.7
61
82
4
184
28
18
13
39
1.88
22189--22412
32
7.3
29
74
10
92
26
17
14
41
1.87
23659--23883
112
2.0
113
98
0
434
45
21
5
27
1.74

Tables:   1

The End!