Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011771.1 Corchorus capsularis cultivar CVL-1 contig11792, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5322
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:3261 original size:64 final size:64

Alignment explanation


    Indices: 3160--3282  Score: 228
    Period size: 64  Copynumber: 1.9  Consensus size: 64

       3150 CACAATAAGT

                                *                                           
       3160 AGTTGAAGGTTAAGGATGTCGAGAATCATAAATCCAATGACGAGTTTCATTACATATATAATTG
          1 AGTTGAAGGTTAAGGATGTCAAGAATCATAAATCCAATGACGAGTTTCATTACATATATAATTG

                                   *                                   
       3224 AGTTGAAGGTTAAGGATGTCAAGGATCATAAATCCAATGACGAGTTTCATTACATATAT
          1 AGTTGAAGGTTAAGGATGTCAAGAATCATAAATCCAATGACGAGTTTCATTACATATAT

       3283 TACTACCGTG


Statistics
Matches: 57,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  64   57  1.00

ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31


Consensus pattern (64 bp):   
AGTTGAAGGTTAAGGATGTCAAGAATCATAAATCCAATGACGAGTTTCATTACATATATAATTG
Done.