genome.fa.s11772.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011772.1 Corchorus capsularis cultivar CVL-1 contig11793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56371

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3705--3772	29	2.3	30	80	10	77	26	13	4	55	1.56
3779--3811	15	2.1	16	88	5	50	33	9	0	57	1.30
5171--5252	42	2.0	42	90	0	128	35	4	18	41	1.72
8196--8282	43	2.0	43	100	0	174	22	16	21	39	1.92
8330--8411	41	2.0	41	95	0	146	25	20	18	35	1.95
11282--11307	13	2.0	13	100	0	52	38	7	0	53	1.30
11834--11884	26	2.0	26	92	0	84	29	11	7	50	1.67
14748--14902	83	1.9	83	82	5	197	22	12	15	49	1.77
20125--20518	22	17.6	22	67	12	149	37	13	11	36	1.82
21104--21168	31	2.1	31	94	2	114	46	3	20	30	1.66
35193--35223	15	2.1	15	100	0	62	12	38	22	25	1.90
50493--50728	105	2.3	105	85	2	323	30	16	16	35	1.92
51523--51581	17	3.7	16	78	15	68	55	0	42	1	1.09
51515--51585	31	2.4	31	88	9	103	56	0	40	2	1.14
52573--52666	23	3.8	23	71	17	89	31	4	21	42	1.72
52550--52667	53	2.2	53	98	1	229	30	3	18	47	1.65
52626--52682	23	2.5	23	85	5	62	40	3	21	35	1.70
53468--53682	108	2.0	107	99	0	421	32	15	13	38	1.86
53731--53792	22	2.8	21	76	11	52	35	16	14	33	1.89
53835--54144	44	7.3	43	73	13	196	34	15	9	40	1.80
53835--54107	22	12.6	23	70	14	143	35	13	9	40	1.78
53841--53960	45	2.7	45	78	11	113	37	13	9	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54251--54497	22	11.3	22	67	10	132	33	15	10	41	1.80
54230--54417	44	4.3	43	74	13	118	34	13	9	42	1.77
54503--54557	22	2.6	21	77	11	58	38	16	5	40	1.72
54518--54568	22	2.3	22	82	0	66	41	19	7	31	1.80
54543--54607	34	1.9	34	87	0	94	38	16	7	36	1.78
54668--54830	22	7.3	22	75	5	121	38	19	9	33	1.84
54993--55030	19	2.0	20	85	15	53	63	2	5	28	1.30
55343--55408	31	2.1	31	88	5	98	48	4	19	27	1.68
56330--56371	2	21.0	2	90	9	68	50	0	2	47	1.14

Tables:   1

The End!