Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011776.1 Corchorus capsularis cultivar CVL-1 contig11797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32603

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1226--1260
18
1.9
18
88
0
52
20
2
2
74
1.08
8587--8641
24
2.4
22
75
21
58
41
7
0
50
1.30
8926--8978
27
2.0
27
85
7
74
39
9
1
49
1.46
13566--13599
9
3.8
9
92
0
59
0
52
0
47
1.00
15904--15945
4
10.5
4
80
19
52
28
0
0
71
0.86
16515--16572
30
1.9
30
100
0
116
56
12
6
24
1.59
18999--19033
18
2.0
17
88
5
52
54
2
5
37
1.39
19511--19563
26
2.2
24
78
15
63
26
16
16
39
1.91
19635--19676
21
2.0
21
85
0
57
40
9
16
33
1.81
22215--22254
20
2.0
20
85
5
53
37
25
17
20
1.94
23221--23254
12
2.8
12
90
0
50
5
8
70
14
1.31
25874--25906
14
2.5
14
90
9
52
18
33
12
36
1.88
31972--32202
112
2.1
112
100
0
462
34
10
26
28
1.89
32230--32272
21
2.0
21
86
0
59
18
39
9
32
1.83
32344--32402
25
2.4
25
91
5
95
35
23
0
40
1.55
32412--32479
26
2.6
26
97
0
127
54
11
0
33
1.37
32412--32483
11
5.4
15
69
25
63
55
12
0
31
1.37
32413--32532
52
2.4
49
74
18
113
54
10
1
33
1.45

Tables:   1

The End!