Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011777.1 Corchorus capsularis cultivar CVL-1 contig11798, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96546

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--64
21
2.1
21
83
0
54
20
37
6
35
1.79
216--262
21
2.1
21
84
11
58
25
0
2
72
0.96
300--337
20
1.9
20
88
0
58
28
0
10
60
1.30
317--361
15
3.3
15
76
23
62
35
0
11
53
1.37
371--425
25
2.3
25
90
6
87
45
0
21
32
1.52
496--539
21
2.1
21
86
0
61
31
6
40
20
1.79
10383--10408
12
2.2
12
100
0
52
30
26
7
34
1.85
18860--18888
11
2.6
11
100
0
58
51
0
13
34
1.42
26203--26250
25
1.9
25
100
0
96
50
25
4
20
1.66
31161--31188
2
14.0
2
100
0
56
50
0
0
50
1.00
45980--46009
2
15.0
2
92
0
51
50
0
3
46
1.18
51275--51428
77
2.0
77
94
2
274
19
18
14
46
1.84
59722--59883
64
2.5
64
98
0
315
35
11
12
40
1.79
67614--67640
2
13.5
2
100
0
54
51
0
0
48
1.00
88050--88109
2
30.0
2
76
6
59
48
10
0
41
1.37
88066--88109
10
4.4
10
91
0
70
50
9
0
40
1.34
90181--90222
21
1.9
23
90
9
70
33
16
0
50
1.46
95988--96032
2
22.0
2
86
4
63
48
4
0
46
1.22
96118--96391
108
2.5
108
91
6
428
39
11
1
47
1.48

Tables:   1

The End!