Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011781.1 Corchorus capsularis cultivar CVL-1 contig11802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58387

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3725--3751
13
2.1
13
100
0
54
51
7
25
14
1.68
6360--6389
14
2.1
15
93
6
53
83
0
16
0
0.65
21078--21152
15
5.0
14
71
12
60
2
20
34
42
1.66
21063--21152
30
3.0
29
83
3
108
3
16
35
44
1.64
21085--21130
12
3.8
12
80
11
58
0
23
36
39
1.55
21091--21137
24
2.0
24
91
0
76
2
19
36
42
1.63
21096--21152
27
2.2
26
84
9
73
1
21
35
42
1.63
23044--23102
12
4.7
12
74
12
55
0
15
33
50
1.44
35706--35736
15
2.1
15
100
0
62
32
19
6
41
1.77
36786--36842
30
1.9
30
96
0
105
26
22
3
47
1.67
36945--36998
29
1.9
29
92
7
94
9
12
3
74
1.20
37292--37593
158
1.9
158
97
0
568
23
11
20
44
1.84
38508--38608
48
2.1
48
88
0
148
33
11
32
21
1.90
38730--38798
26
2.8
25
85
8
81
47
4
28
18
1.68
38730--38786
22
2.4
22
85
11
69
45
1
29
22
1.63
41912--41976
2
31.5
2
81
6
76
43
9
0
47
1.35
42135--42593
149
3.0
150
91
3
735
35
8
4
51
1.53
45010--45500
261
1.9
261
98
0
955
30
17
16
34
1.93

Tables:   1

The End!