Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011783.1 Corchorus capsularis cultivar CVL-1 contig11804, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42586

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
722--753
4
8.0
4
92
0
55
50
21
0
28
1.49
1135--1237
34
3.0
34
100
0
206
37
21
14
26
1.92
2466--2496
2
15.5
2
100
0
62
51
0
0
48
1.00
4163--4194
16
2.1
15
94
5
55
40
12
0
46
1.42
5487--5567
40
2.0
40
87
0
117
30
12
17
39
1.86
8783--8815
2
16.5
2
100
0
66
48
0
0
51
1.00
11819--11891
37
2.0
37
91
0
119
28
17
15
38
1.90
11989--12063
37
2.0
37
84
5
98
30
18
13
37
1.89
11788--12123
170
2.0
170
93
1
575
28
22
15
33
1.94
12747--12771
12
2.1
12
100
0
50
44
16
40
0
1.47
15073--15114
2
21.0
2
100
0
84
50
50
0
0
1.00
17049--17149
18
5.6
18
92
0
157
29
25
20
23
1.99
19402--19426
12
2.1
12
100
0
50
52
0
16
32
1.44
20378--20410
16
2.1
16
94
0
57
78
0
21
0
0.75
27289--27327
20
1.9
20
89
5
60
58
7
2
30
1.39
27334--27488
73
2.1
73
88
4
224
40
7
29
21
1.81
30639--30691
25
2.0
27
82
13
67
56
1
9
32
1.42
31097--31132
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!