Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011787.1 Corchorus capsularis cultivar CVL-1 contig11808, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16666
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:10322 original size:17 final size:17

Alignment explanation


    Indices: 10300--10334  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

      10290 CACGTATAAC

                             
      10300 TGCTTAGCATGTCAATT
          1 TGCTTAGCATGTCAATT

                             
      10317 TGCTTAGCATGTCAATT
          1 TGCTTAGCATGTCAATT

             
      10334 T
          1 T

      10335 ACAAAACTCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43


Consensus pattern (17 bp):   
TGCTTAGCATGTCAATT

Found at i:10465 original size:13 final size:13

Alignment explanation


    Indices: 10447--10476  Score: 60
    Period size: 13  Copynumber: 2.3  Consensus size: 13

      10437 TCCCACACTC

                         
      10447 TCATGTTTTTGGT
          1 TCATGTTTTTGGT

                         
      10460 TCATGTTTTTGGT
          1 TCATGTTTTTGGT

                
      10473 TCAT
          1 TCAT

      10477 CTTGGCTTGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.10, C:0.10, G:0.20, T:0.60


Consensus pattern (13 bp):   
TCATGTTTTTGGT
Done.