Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011789.1 Corchorus capsularis cultivar CVL-1 contig11810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37860
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--80 Score: 153
Period size: 2 Copynumber: 40.5 Consensus size: 2
1 TC TC TC TC TC TC TC T- TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
42 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
81 TTCTTTGGTG
Statistics
Matches: 77, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 76 0.99
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:2280 original size:23 final size:23
Alignment explanation
Indices: 2250--2306 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
2240 CCAAGATATG
2250 CATTTTAGAGGAAGCCTTGACTT
1 CATTTTAGAGGAAGCCTTGACTT
2273 CATTTTAGAGGAAGCCTTGACTT
1 CATTTTAGAGGAAGCCTTGACTT
2296 CATTTTAGAGG
1 CATTTTAGAGG
2307 TCAGCTTCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (23 bp):
CATTTTAGAGGAAGCCTTGACTT
Found at i:11950 original size:15 final size:15
Alignment explanation
Indices: 11895--11947 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
11885 GCAGCAGCAG
*
11895 CAGCAACAACAACAA
1 CAGCAACAACAACCA
*
11910 CAGCAACAGCAACAGCA
1 CAGCAACAACAAC--CA
*
11927 GCAGCAGCAACAACCA
1 -CAGCAACAACAACCA
11943 CAGCA
1 CAGCA
11948 GCAGTCACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 17 0.55
16 2 0.06
17 1 0.03
18 11 0.35
ACGTcount: A:0.49, C:0.36, G:0.15, T:0.00
Consensus pattern (15 bp):
CAGCAACAACAACCA
Found at i:11951 original size:3 final size:3
Alignment explanation
Indices: 11877--11935 Score: 64
Period size: 3 Copynumber: 19.7 Consensus size: 3
11867 TCAGATGTTT
* * * * * *
11877 CAG CAG CAG CAG CAG CAG CAG CAA CAA CAA CAA CAG CAA CAG CAA CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
11925 CAG CAG CAG CA
1 CAG CAG CAG CA
11936 ACAACCACAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.44, C:0.34, G:0.22, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:12460 original size:30 final size:30
Alignment explanation
Indices: 12426--12527 Score: 104
Period size: 30 Copynumber: 3.4 Consensus size: 30
12416 TTACATGAAC
12426 CAGCAACAACAGTTGCAGC-TGCAGCAACA
1 CAGCAACAACAGTTGCAGCATGCAGCAACA
* *
12455 GCAGCAGCAGCAGTTGCAGCAT-CAGCAACA
1 -CAGCAACAACAGTTGCAGCATGCAGCAACA
* *
12485 -A-CAGCAACAGTTGCAGCAGATGCAGCATCAA
1 CAGCAACAACAGTTGCAGC--ATGCAGCAAC-A
12516 CAGCAACAACAG
1 CAGCAACAACAG
12528 CAGCAGCAAC
Statistics
Matches: 60, Mismatches: 5, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
27 15 0.25
28 1 0.02
29 2 0.03
30 31 0.52
31 2 0.03
32 1 0.02
33 8 0.13
ACGTcount: A:0.38, C:0.29, G:0.23, T:0.10
Consensus pattern (30 bp):
CAGCAACAACAGTTGCAGCATGCAGCAACA
Found at i:12461 original size:3 final size:3
Alignment explanation
Indices: 12440--12556 Score: 67
Period size: 3 Copynumber: 39.0 Consensus size: 3
12430 AACAACAGTT
* * ** * * *
12440 GCA GCT GCA GCA ACA GCA GCA GCA GCA GTT GCA GCA TCA GCA ACA ACA
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA
* ** * * * *
12488 GCA ACA GTT GCA GCA G-A TGCA GCA TCA ACA GCA ACA ACA GCA GCA
1 GCA GCA GCA GCA GCA GCA -GCA GCA GCA GCA GCA GCA GCA GCA GCA
*
12533 GCA ACTA -CA GCA GCA GCA GCA GCA
1 GCA GC-A GCA GCA GCA GCA GCA GCA
12557 AGAGACAACC
Statistics
Matches: 86, Mismatches: 24, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
2 2 0.02
3 82 0.95
4 2 0.02
ACGTcount: A:0.38, C:0.31, G:0.24, T:0.08
Consensus pattern (3 bp):
GCA
Found at i:12464 original size:21 final size:21
Alignment explanation
Indices: 12426--12465 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
12416 TTACATGAAC
**
12426 CAGCAACAACAGTTGCAGCTG
1 CAGCAACAACAGCAGCAGCTG
*
12447 CAGCAACAGCAGCAGCAGC
1 CAGCAACAACAGCAGCAGC
12466 AGTTGCAGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.33, G:0.25, T:0.07
Consensus pattern (21 bp):
CAGCAACAACAGCAGCAGCTG
Found at i:19765 original size:18 final size:18
Alignment explanation
Indices: 19742--19798 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
19732 AACGTCTAAT
19742 TTTTTGATTAAAAAATTA
1 TTTTTGATTAAAAAATTA
*
19760 TTTTTG-TGGAAAAAA-TA
1 TTTTTGAT-TAAAAAATTA
19777 -TTTT-ATTGAAAAAATTA
1 TTTTTGATT-AAAAAATTA
19794 TTTTT
1 TTTTT
19799 TTTGAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
16 11 0.34
17 5 0.16
18 16 0.50
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (18 bp):
TTTTTGATTAAAAAATTA
Found at i:19772 original size:17 final size:16
Alignment explanation
Indices: 19751--19799 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 16
19741 TTTTTTGATT
19751 AAAAAATTATTTTTGTGG
1 AAAAAATTATTTTT-T-G
19769 AAAAAA-TATTTTATTG
1 AAAAAATTATTTT-TTG
19785 AAAAAATTATTTTTT
1 AAAAAATTATTTTTT
19800 TTGAATTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 9 0.31
17 13 0.45
18 7 0.24
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (16 bp):
AAAAAATTATTTTTTG
Found at i:19921 original size:11 final size:11
Alignment explanation
Indices: 19889--19913 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
19879 AAATTTTTTT
19889 GAAAAGAAAAA
1 GAAAAGAAAAA
19900 GAAAAGAAAAA
1 GAAAAGAAAAA
19911 GAA
1 GAA
19914 GAAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
GAAAAGAAAAA
Found at i:28400 original size:321 final size:323
Alignment explanation
Indices: 27146--28578 Score: 1883
Period size: 321 Copynumber: 4.5 Consensus size: 323
27136 ATCCATGAAA
* * *** *
27146 GCCACAATACATAGAAAAAATATATAATTCAACGCCAAAAAAATTGACAAACTTTTCACACTTCT
1 GCCACAATACACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
** * * * * *
27211 CCTATCGTTTTTCCATTTTTTTACGAACTAATTTCTAATTATATCGAAACAAGATTGACATGCTA
66 AATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC
* * *
27276 G-AAAAACAAATCCTTATAT-CAGTTATTGTTGAGATTT-GCTTCGATGAATATAGATATTTCAA
131 GAAAAAACAAATCCTTATATCCA-ATATTGCTGAGATTTAG-TTCAATGAATATAGATATTTCAA
* * * **
27338 AGAGT-CTTTGCGCCAAAAATCATGCAAAATTGA-GTTGGGACTCCGGAACGCGTTTTTAGCCAA
194 AGAGTCCTTT-TGCAAAAAATCATGCAAAATTAAGGCAGGG-CTCCGGAACGCGTTTTTAGCCAA
* *
27401 AAACAGTGATGGTTAATACACGATTTCGGCAAAAAACTGACCCGAAAAGTTTTTTCTCAAA-TTT
257 AAACCGTGATGGTTAATACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAAATTTT
27465 TT
322 TT
* * * * * * *
27467 GTCACAATACTCAGAAAAAATACATAATTCAACACCAAAAATATTGGCGGGTTTTTCACGCTTCT
1 GCCACAATACACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
* *
27532 AATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATTCTT
66 AATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC
* * *
27597 GAAAAAGCAAATCCTTATATCCAATATTGTTGAGATTTAGTTCGATGAATATAGATATTTC-AAG
131 GAAAAAACAAATCCTTATATCCAATATTGCTGAGATTTAGTTCAATGAATATAGATATTTCAAAG
* *
27661 AAGTACCTTTTGCAAAAAATCATGCAAAATTAAGGCAGGGCTCCAGAACGCGTTTTTATCCAAAA
196 -AGT-CCTTTTGCAAAAAATCATGCAAAATTAAGGCAGGGCTCCGGAACGCGTTTTTAGCCAAAA
* * * * *
27726 ACCGTGATGGTTAGTACACGATTTTGGTTAAAAA-TGACCCGAAAAATTTTTTCTTAAA-TTTTT
259 ACCGTGATGGTTAATACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAAATTTTTT
* ** * ** *
27789 GCCATAATACACAGAAAAAATGCATAATTTAATACCAAAAAGATTGACGGGTTTTTCACGCTTCT
1 GCCACAATACACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
* * * *
27854 AATATCATTTTTCCA-ATTTTTCCGAATTAATTTGTAATTAAATCGATACAAGATTGAGATGCTC
66 AATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC
*
27918 GAAAAAA-AAATCCTTATATCCAATATTGCTGAGATTTAGTTCAATGAATATAGATATTTCAAGG
131 GAAAAAACAAATCCTTATATCCAATATTGCTGAGATTTAGTTCAATGAATATAGATATTTCAAAG
* * * *
27982 AGTCCTTTTGCAAAAAATCCTGCAAAATTAAGGCAGGGCTCTGGAACGCGTTTTTATCAAAAAAC
196 AGTCCTTTTGCAAAAAATCATGCAAAATTAAGGCAGGGCTCCGGAACGCGTTTTTAGCCAAAAAC
* * *
28047 CGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCG-AAATTTTTTTTTCAAATTTTTT
261 CGTGATGGTTAATACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAAATTTTTT
* * * * *
28109 ACTACAATACACAGAAAAAATGTATAATTTAATGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
1 GCCACAATACACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
**
28174 AATATCGAGTTTCCATTTTTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC
66 AATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC
* * * *
28238 CAAAAAACAAATCCTCATATCCAATATTGCTGAGATTTGGTTCAACGAATATAGATATTTCAAAG
131 GAAAAAACAAATCCTTATATCCAATATTGCTGAGATTTAGTTCAATGAATATAGATATTTCAAAG
* * * *
28303 AGT-CTTTGTGCTAAGAATCATGCAATATTGA-GCTAGGGCTCCGGAACGCGTTTTTAGCCAAAA
196 AGTCCTTT-TGCAAAAAATCATGCAAAATTAAGGC-AGGGCTCCGGAACGCGTTTTTAGCCAAAA
* * *
28366 ACCGTGATGATTAATACACGATTTCGGTTAAAAACTGACGCGAAAAGTTTTTTCTC-AATTTTTT
259 ACCGTGATGGTTAATACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAAATTTTTT
* * * * * *
28430 GCCACAATACACAGAAAAAATATATAATTCAACGCCAAAAACATTGATGGGATTTTTACACTTTT
1 GCCACAATACACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
* * *
28495 AATATTGTTTTTCC-TTTTTTTCCGAACTAATTTCTAATTAAATCGAAACAAGATTGAGATACTC
66 AATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC
28559 GAAAAAACAAATCCTTATAT
131 GAAAAAACAAATCCTTATAT
28579 TTAATTTGCT
Statistics
Matches: 984, Mismatches: 112, Indels: 32
0.87 0.10 0.03
Matches are distributed among these distances:
319 101 0.10
320 196 0.20
321 440 0.45
322 164 0.17
323 75 0.08
324 8 0.01
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (323 bp):
GCCACAATACACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
AATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTC
GAAAAAACAAATCCTTATATCCAATATTGCTGAGATTTAGTTCAATGAATATAGATATTTCAAAG
AGTCCTTTTGCAAAAAATCATGCAAAATTAAGGCAGGGCTCCGGAACGCGTTTTTAGCCAAAAAC
CGTGATGGTTAATACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAAATTTTTT
Found at i:30378 original size:317 final size:318
Alignment explanation
Indices: 28757--31854 Score: 3569
Period size: 318 Copynumber: 9.7 Consensus size: 318
28747 CGACCGATCA
* * * *
28757 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCTGGGGCTACGTAACACGTTTTTAGCCAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
* * * *
28822 TCGTGATGGTTAGTACGCGATTTCGGCTAAAAAATGACCCGAAAATTTTTTTCTCAATTTTTTGC
66 CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGC
* * *
28887 CACAATACACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACAAACTATTCACGTTTCTAA
131 CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACGCTTCTAA
* *
28952 TATCGTTTTACCATTTTTTTC-GAACTAATTTCTAATTAAATCGAAAAAAGATT-AACATACTCG
196 TATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATCG-AAAAAGATTGAA-ATGCTCG
* * *
29015 AAAAAAACAAATCCTTATATCCAATATTGCTGATATTTACTTTGATGAATATAGATATTTCAAG
259 -AAAAAAC-AAT-CTTATATCC-ATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* * * *
29079 GAGTCTTTGTGCCAAAAATCATGCAAAATTGAGTCGGGGCTCCAGAACGCGTTTTTAGCCAAAAC
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
* * *
29144 CCGTGATGGTTAGTACACGATTTCGGCAAAAAACTAACCTGAAAAGTTTTTTCTCAATTTTTTGC
66 CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGC
* *
29209 CACAATACTC-CAAAAAATATATAATTCAACGCCAGAAAGATTGACAAA-TCATTCACGCTTCTA
131 CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACT-ATTCACGCTTCTA
* *
29272 ATATCGTTTTTCCATTTTTTTCCGAACTAATTTCTAATTAAATCGAAAAAAGATTGACATGCTCG
195 ATATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATCG-AAAAAGATTGAAATGCTCG
* * *
29337 AAAAAAAAATCATTATATCCAATATTACTGAGATTTGCTT---TGAAGAT-G-T-TTTCAAG
259 AAAAAACAATC-TTATATCC-ATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* **
29393 GAGTCTTTGCGTCAAAAATCATGCAAAATTGAGTTGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC-AAAA
* **
29458 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTTACCTAAAAAGTTTTTTTTCTCAATTTTT
65 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAG--TTTTTTCTCAATTTTT
* * * * * *
29523 TGCCACAATACTCCGAAAAAATATATAATTCAACGCCAAAAATATTGACAGACTTTTCACACTTA
128 TGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACGCTTC
*
29588 TAATATCGTTTTTCCA-TTTTTTCTGAA-TAAATTTCTAATTAAATCGAAACAAGATTCAAATGC
193 TAATATCGTTTTTCCATTTTTTTCTGAACT-AATTTCTAATTAAATCGAAA-AAGATTGAAATGC
* * * * * * *
29651 TCTTATAAACCAATCCTTATATCCA-ATGTGACTAACATTTGGC-TCGATGAATATAAATATGTC
256 TC-GAAAAAACAAT-CTTATATCCATAT-TG-CTGAGATTT-GCTTCGATGAATATAGATATTTC
29714 AAG
316 AAG
* * *
29717 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGACTCCGGAA--C---TTTAGCTAAACA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
* **
29777 TCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTTTCTCAATTTTTT
66 CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAA--AGTTTTTTCTCAATTTTTT
* * * **
29842 GCCACAATACACAAAAAAATATATATAATTCAACGTCAAAAAGATTGACAAACTATTCACATTTC
129 GCCACAATACTCAGAAAAA-ATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACGCTTC
* *
29907 TAATATCGTTTTTCCATTTTTTT-T-AACTAATTTCTATTTAAATCAAAAAAAGATT-AATATGC
193 TAATATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATC-GAAAAAGATTGAA-ATGC
* * * *
29969 TGGAAAAAACAAATCCTTATATCCAATATTGCTGAGATTTACTTCGATGAATATATATATCTCAA
256 TCGAAAAAAC-AAT-CTTATATCC-ATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAA
30034 G
318 G
* ** *
30035 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCCATAACGTGTTTTTAGCCAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC---AA
* * * * *
30100 AAACCGTGATGGTTAGTACACAATTTCGTCTAAAAGCTAACCCGAAAAGTTTTTTATCAATTTTT
63 AAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTT
* *
30165 TGCCACAATACTCCGAAAAAATATATAATTCAACG-CAAGAAAGATTGACAAACCATTCACGCTT
128 TGCCACAATACTCAGAAAAAATATATAATTCAACGCCAA-AAAGATTGACAAACTATTCACGCTT
* *
30229 CTAATATCGTTTTTCCATTTTTTTCTTAACTAATTTCTAATTAAATCGAAAAACGATTGACATGC
192 CTAATATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATCGAAAAA-GATTGAAATGC
* * *
30294 TCGAAAAAACAAT-TGA-CT-C-T-TTACTGAGATTTGCTTCGATGAATATAGATATTTCAAG
256 TCGAAAAAACAATCTTATATCCATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* * *
30352 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAATGCGTTTTTAGCAAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
** * *
30417 CC-----------TACACGATTTCGATTGAAAACTGACCTC-AAGAGTTTTTTTCTCAATTTTTT
66 CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC-CGAAAAG-TTTTTTCTCAATTTTTT
* ** * *
30470 GCCACAATACTCCGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACACTTCT
129 GCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACGCTTCT
* * * * *
30535 AATATCGTTTTTCCA-TATTTTCTGAATTAATTTCAAATTAAATCTAAACAAGATTCAAATGCTC
194 AATATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATCGAAA-AAGATTGAAATGCTC
** * * *
30599 TTATAAACAAATCCTTATATCCA-ATGTGGCTAACATTTGAC-TCGATGAATATAGATATTTCAA
258 GAAAAAAC-AAT-CTTATATCCATAT-T-GCTGAGATTTG-CTTCGATGAATATAGATATTTCAA
30662 G
318 G
** * *
30663 GAGTCCTTTGCTTCAAAACTCATGCAAAATTGAGCCGGGACTCCGGAACGCGTTTTTAGCCAAAA
1 GAGT-CTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAA
* * * *
30728 ACCGTGAT-G--A--ACATGATTTCGGCAAAAAACTGACTCGAAAAGTATTTTCTCAATTTTTTG
65 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTG
* * * * * *
30788 CCACAATACTCAGAAAAAATATTTAATTCAACGTC-AAAAGATTGACAGACTTTTCACACATCTA
130 CCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACGCTTCTA
* * * *
30852 ATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCT
195 ATATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATCGAAA-AAGATTGAAATGCTCG
* * * *
30917 TATAAACAATCCTTATATCCA-ATGTGGCTAACATTTGGC-TCGATGAATATAGATATTTCAAG
259 AAAAAACAAT-CTTATATCCATAT-T-GCTGAGATTT-GCTTCGATGAATATAGATATTTCAAG
* * * *
30979 GAGTTTTTGCACTAAAAATCATGAAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
* *
31044 CCGTGATGGTTAGTACACGATTTCGGCAAAAAACTGACCCGAAAAGTATTTTCTCAATTTTTTGC
66 CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGC
* * * *** * *
31109 GACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGGCGGGCTTTTCACGCTTCTTA
131 CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACGCTTCTAA
* * *
31174 TATCGTTTTTCTA-TTTTTT-T-AACTAATTTCTAATTAAATCGAAACAAGATGGAGATGCTCGA
196 TATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATCGAAA-AAGATTGAAATGCTCGA
* * * *
31236 AAAAAAAATCCTTGTATCTAATATTGCTGAGATTTGCTTCGATGAATACAGATATTTCAAG
260 AAAAACAAT-CTTATATC-CATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* *
31297 GAATCTTTGCGCCAAGAAA-CATGCAAAATTGAGCCGGGGCTCCGCAACGCGTTTTTAGCCAAAA
1 GAGTCTTTGCGCCAA-AAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAA
* * * * *
31361 ACCGTGATGGTTAGTACATGATTTTGGCAAAAAACTGACCAGAAAAGTATTTTCTCAATTTTTTG
65 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTG
* * * * **
31426 CCAGAACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGGACT-TTCACGCTTCTA
130 CCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACGCTTCTA
* * *
31490 ATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCG
195 ATATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATCG-AAAAAGATTGAAATGCTCG
* * * *
31555 AAAAAACAAATCCTTATATTCAATATTGCTAAGATTTGTTTCGATGAATATAGATATTTTAAG
259 AAAAAAC-AAT-CTTATA-TCCATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* * * ** * *
31618 GAGTCTTTGCGCCAAAAATCTTGAAAAATTGAGCAGGGGCTTTGGAACGCGTTGTTAGTCAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
* * * *
31683 CCGTGATGGTTAGTACACAATATCGGGTAAAAACTGAACCGAAAA-TTTTTTCCTCAATTTTTTG
66 CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTT-CTCAATTTTTTG
* * * * ** *
31747 CCACAATACACA-AAAAAATTTATAATTGAACGCCAAAAAAATTGACAAAC-ATTTCGTGCTTCA
130 CCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTA-TTCACGCTTCT
* * *
31810 AATATCGTTTTTCCATTTTTTTCCGAATTAATTTATAATTAAATC
194 AATATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATC
31855 CTTGTATCGA
Statistics
Matches: 2414, Mismatches: 271, Indels: 183
0.84 0.09 0.06
Matches are distributed among these distances:
303 68 0.03
304 93 0.04
305 3 0.00
306 2 0.00
307 1 0.00
308 1 0.00
309 1 0.00
310 1 0.00
311 35 0.01
312 57 0.02
314 70 0.03
315 109 0.05
316 105 0.04
317 304 0.13
318 543 0.22
319 81 0.03
320 205 0.08
321 326 0.14
322 170 0.07
323 69 0.03
324 90 0.04
325 36 0.01
326 44 0.02
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (318 bp):
GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGC
CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACGCTTCTAA
TATCGTTTTTCCATTTTTTTCTGAACTAATTTCTAATTAAATCGAAAAAGATTGAAATGCTCGAA
AAAACAATCTTATATCCATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
Found at i:31755 original size:639 final size:634
Alignment explanation
Indices: 28757--31854 Score: 3614
Period size: 638 Copynumber: 4.9 Consensus size: 634
28747 CGACCGATCA
* * * *
28757 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCTGGGGCTACGTAACACGTTTTTAGCCAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
* * * *
28822 TCGTGATGGTTAGTACGCGATTTCGGCTAAAAAA-TGACCCGAAAATTTTTTTCTCAATTTTTTG
66 CCGTGATGGTTAGTACACGATTTCGGC-AAAAAACTGACCAGAAAAGTTTTTTCTCAATTTTTTG
* * * *
28886 CCACAATACACAGAAAAAATATATAATTCAATGCCAAAAAGATTGACAAACTATTCACGTTTCTA
130 CCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGACT-TTCACGCTTCTA
* * *
28951 ATATCGTTTTACCATTTTTTTC-GAACTAATTTCTAATTAAATCGAAAAAAGATT-AACATACTC
194 ATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTCAA-ATGCTC
* * ** *
29014 GAAAAAAACAAATCCTTATATCCAATATTGCTGATATTTACTTTGATGAATATAGATATTTCAAG
258 G-AAAAAAC-AATCCTTATATCCAAT-TTGCTAACATTTGGTTCGATGAATATAGATATTTCAAG
* * *
29079 GAGTCTTTGTGCCAAAAATCATGCAAAATTGAGTCGGGGCTCCAGAACGCGTTTTTAGCCAAAAC
320 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAG-CGGGGCTCCGGAACGCGTTTTTAG-CAAAAA
*
29144 CCGTGATGGTTAGTACACGATTTCGGCAAAAAACT-AACCTGAAAAGTTTTTTCTCAATTTTTTG
383 CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAACC-GAAAA-TTTTTTCTCAATTTTTTG
* * *
29208 CCACAATACTC-CAAAAAATATATAATTCAACGCCAGAAAGATTGACAAA-TCATTCACGCTTCT
446 CCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACT-ATTCACACTTCT
*
29271 AATATCGTTTTTCCATTTTTTTCCGAACTAATTTCTAATTAAATCGAAAAAAGATTGACATGCTC
510 AATATCGTTTTTCCATTTTTTT---AACTAATTTCTAATTAAATCGAAAAAAGATTGAAATGCTC
* * *
29336 GAAAAAAAAATCATTATATCCAATATTACTGAGATTTGCTT---TGAAGAT-G-T-TTTCAAG
572 GAAAAAAAAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* **
29393 GAGTCTTTGCGTCAAAAATCATGCAAAATTGAGTTGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC-AAAA
* *
29458 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTTACCTA-AAAAGTTTTTTTTCTCAATTTT
65 ACCGTGATGGTTAGTACACGATTTCGGCAAAAAACTGACC-AGAAAAG--TTTTTTCTCAATTTT
* * *
29522 TTGCCACAATACTCCGAAAAAATATATAATTCAACGCCAAAAATATTGACAGACTTTTCACACTT
127 TTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGAC-TTTCACGCTT
* * *
29587 ATAATATCGTTTTTCCA-TTTTTTCTGAATAAATTTCTAATTAAATCGAAACAAGATTCAAATGC
191 CTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTCAAATGC
* * * * * * *
29651 TCTTATAAACCAATCCTTATATCCAATGTGACTAACATTTGGCTCGATGAATATAAATATGTCAA
256 TC-GAAAAAACAATCCTTATATCCAATTTG-CTAACATTTGGTTCGATGAATATAGATATTTCAA
* *
29716 GGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGACTCCGGAA--C---TTTAGCTAAAC
319 GGAGTCTTTGCGCCAAAAATCATGCAAAATTGAG-CGGGGCTCCGGAACGCGTTTTTAGC-AAAA
* * *
29776 ATCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTTTCTCAATTTTT
382 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAACCGAAA---ATTTTTTCTCAATTTTT
* * * *
29841 TGCCACAATACACAAAAAAATATATATAATTCAACGTCAAAAAGATTGACAAACTATTCACATTT
444 TGCCACAATACTCAGAAAAA-ATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACACTT
* *
29906 CTAATATCGTTTTTCCATTTTTTTTAACTAATTTCTATTTAAATCAAAAAAAGATT-AATATGCT
508 CTAATATCGTTTTTCCA-TTTTTTTAACTAATTTCTAATTAAATCGAAAAAAGATTGAA-ATGCT
* * * *
29970 GGAAAAAACAAATCCTTATATCCAATATTGCTGAGATTTACTTCGATGAATATATATATCTCAAG
571 CGAAAAAA-AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* ** *
30035 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCCATAACGTGTTTTTAGCCAAAAA
1 GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC---AA
* * * * * * *
30100 AAACCGTGATGGTTAGTACACAATTTCGTCTAAAAGCTAACCCGAAAAGTTTTTTATCAATTTTT
63 AAACCGTGATGGTTAGTACACGATTTCGGCAAAAAACTGACCAGAAAAGTTTTTTCTCAATTTTT
* * *
30165 TGCCACAATACTCCGAAAAAATATATAATTCAACG-CAAGAAAGATTGACAAACCATTCACGCTT
128 TGCCACAATACTCAGAAAAAATATATAATTCAACGCCAA-AAAGATTGACAGA-CTTTCACGCTT
* * * * *
30229 CTAATATCGTTTTTCCATTTTTTTCTTAACTAATTTCTAATTAAATCGAAAAACGATTGACATGC
191 CTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTCAAATGC
* * * * * *
30294 TCGAAAAAACAAT--TGA-CT-C--TTTACTGAGATTTGCTTCGATGAATATAGATATTTCAAGG
256 TCGAAAAAACAATCCTTATATCCAATTTGCTAACATTTGGTTCGATGAATATAGATATTTCAAGG
*
30353 AGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAATGCGTTTTTAGCAAAAAAC
321 AGTCTTTGCGCCAAAAATCATGCAAAATTGAG-CGGGGCTCCGGAACGCGTTTTTAGC-AAAAAC
** * * *
30418 C-----------TACACGATTTCGATTGAAAACTG-ACCTCAAGAGTTTTTTTCTCAATTTTTTG
384 CGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAACC-GAA-A-ATTTTTTCTCAATTTTTTG
* ** *
30471 CCACAATACTCCGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACACTTCTA
446 CCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACACTTCTA
* * * * * * *
30536 ATATCGTTTTTCCATATTTTCTGAATTAATTTCAAATTAAATCTAAACAAGATTCAAATGCTCTT
511 ATATCGTTTTTCCAT-TTTT-TTAACTAATTTCTAATTAAATCGAAAAAAGATTGAAATGCTC-G
* * * * * *
30601 ATAAACAAATCCTTATATCCAATGTGGCTAACATTTGAC-TCGATGAATATAGATATTTCAAG
573 AAAAAAAAATCCTTATATCCAATATTGCTGAGATTTG-CTTCGATGAATATAGATATTTCAAG
** * *
30663 GAGTCCTTTGCTTCAAAACTCATGCAAAATTGAGCCGGGACTCCGGAACGCGTTTTTAGCCAAAA
1 GAGT-CTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAA
* *
30728 ACCGTGAT-G--A--ACATGATTTCGGCAAAAAACTGACTC-GAAAAGTATTTTCTCAATTTTTT
65 ACCGTGATGGTTAGTACACGATTTCGGCAAAAAACTGAC-CAGAAAAGTTTTTTCTCAATTTTTT
* * * *
30787 GCCACAATACTCAGAAAAAATATTTAATTCAACGTC-AAAAGATTGACAGACTTTTCACACATCT
129 GCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGAC-TTTCACGCTTCT
* *
30851 AATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTC
193 AATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTCAAATGCTC
** * * *
30916 TTATAAACAATCCTTATATCCAATGTGGCTAACATTTGGCTCGATGAATATAGATATTTCAAGGA
258 GAAAAAACAATCCTTATATCCAAT-TTGCTAACATTTGGTTCGATGAATATAGATATTTCAAGGA
* * * *
30981 GTTTTTGCACTAAAAATCATGAAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACC
322 GTCTTTGCGCCAAAAATCATGCAAAATTGAG-CGGGGCTCCGGAACGCGTTTTTAG-CAAAAACC
* * * *
31046 GTGATGGTTAGTACACGATTTCGGCAAAAAACTGACCCGAAAAGTATTTTCTCAATTTTTTGCGA
385 GTGATGGTTAGTACACGATTTCGGCTAAAAACTGAACCGAAAA-TTTTTTCTCAATTTTTTGCCA
* * *** * * *
31111 CAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGGCGGGCTTTTCACGCTTCTTATA
449 CAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACACTTCTAATA
* * * *
31176 TCGTTTTTCTATTTTTTTAACTAATTTCTAATTAAATCGAAACAAGATGGAGATGCTCGAAAAAA
514 TCGTTTTTCCATTTTTTTAACTAATTTCTAATTAAATCGAAAAAAGATTGAAATGCTCGAAAAAA
* * *
31241 AAATCCTTGTATCTAATATTGCTGAGATTTGCTTCGATGAATACAGATATTTCAAG
579 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* *
31297 GAATCTTTGCGCCAAGAAA-CATGCAAAATTGAGCCGGGGCTCCGCAACGCGTTTTTAGCCAAAA
1 GAGTCTTTGCGCCAA-AAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAA
* * *
31361 ACCGTGATGGTTAGTACATGATTTTGGCAAAAAACTGACCAGAAAAGTATTTTCTCAATTTTTTG
65 ACCGTGATGGTTAGTACACGATTTCGGCAAAAAACTGACCAGAAAAGTTTTTTCTCAATTTTTTG
* * * * *
31426 CCAGAACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGGACTTTCACGCTTCTAA
130 CCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGACTTTCACGCTTCTAA
* * *
31491 TATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCGA
195 TATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTCAAATGCTCGA
* * * *
31556 AAAAACAAATCCTTATATTCAATATTGCTAAGATTTGTTTCGATGAATATAGATATTTTAAGGAG
260 AAAAAC-AATCCTTATATCCAAT-TTGCTAACATTTGGTTCGATGAATATAGATATTTCAAGGAG
* * ** *
31621 TCTTTGCGCCAAAAATCTTGAAAAATTGAGCAGGGGCTTTGGAACGCGTTGTTAGTCAAAAACCG
323 TCTTTGCGCCAAAAATCATGCAAAATTGAGC-GGGGCTCCGGAACGCGTTTTTAG-CAAAAACCG
* * *
31686 TGATGGTTAGTACACAATATCGGGTAAAAACTGAACCGAAAATTTTTTCCTCAATTTTTTGCCAC
386 TGATGGTTAGTACACGATTTCGGCTAAAAACTGAACCGAAAATTTTTT-CTCAATTTTTTGCCAC
* * * * *** *
31751 AATACACA-AAAAAATTTATAATTGAACGCCAAAAAAATTGACAAAC-ATTTCGTGCTTCAAATA
450 AATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTA-TTCACACTTCTAATA
* *
31814 TCGTTTTTCCATTTTTTTCCGAATTAATTTATAATTAAATC
514 TCGTTTTTCCATTTTTTT---AACTAATTTCTAATTAAATC
31855 CTTGTATCGA
Statistics
Matches: 2102, Mismatches: 274, Indels: 167
0.83 0.11 0.07
Matches are distributed among these distances:
619 1 0.00
620 87 0.04
621 72 0.03
622 4 0.00
623 2 0.00
624 1 0.00
625 1 0.00
626 14 0.01
627 151 0.07
628 120 0.06
629 77 0.04
630 1 0.00
632 1 0.00
633 106 0.05
634 61 0.03
635 178 0.08
636 104 0.05
637 187 0.09
638 342 0.16
639 311 0.15
640 16 0.01
641 22 0.01
642 154 0.07
643 43 0.02
644 46 0.02
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (634 bp):
GAGTCTTTGCGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
CCGTGATGGTTAGTACACGATTTCGGCAAAAAACTGACCAGAAAAGTTTTTTCTCAATTTTTTGC
CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGACTTTCACGCTTCTAAT
ATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTCAAATGCTCGAA
AAAACAATCCTTATATCCAATTTGCTAACATTTGGTTCGATGAATATAGATATTTCAAGGAGTCT
TTGCGCCAAAAATCATGCAAAATTGAGCGGGGCTCCGGAACGCGTTTTTAGCAAAAACCGTGATG
GTTAGTACACGATTTCGGCTAAAAACTGAACCGAAAATTTTTTCTCAATTTTTTGCCACAATACT
CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAAACTATTCACACTTCTAATATCGTTTT
TCCATTTTTTTAACTAATTTCTAATTAAATCGAAAAAAGATTGAAATGCTCGAAAAAAAAATCCT
TATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
Found at i:32391 original size:603 final size:603
Alignment explanation
Indices: 30653--32458 Score: 2293
Period size: 603 Copynumber: 2.9 Consensus size: 603
30643 ATGAATATAG
* * * *
30653 ATATTTCAAGGAGTCCTTTGCTTCAA-AACTCATGCAAAATTGAGCCGGGACTCCGGAACGCGTT
1 ATATTTCAAGGAAT-CTTTGCTCCAAGAA-ACATGCAAAATTGAGCCGGGGCTCCGGAACGCGTT
* * *
30717 TTTAGCCAAAAACCGTGATGAACA-TGATTTCGGCAAAAAACTGACTCGAAAAGTATTTTCTCAA
64 TTTAGCCAAAAACCGTGACGTACACTGATTTCGGCAAAAAACTGACCCGAAAAGTATTTTCTCAA
* * * * *
30781 TTTTTTGCCACAATACTCAGAAAAAATATTTAATTCAACGTCAAA-AGATTGAC-AGACTTTTCA
129 TTTTTTGCCAGAACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGAGAC-TTTCA
* * * *
30844 CACATCTAATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCA
193 CGCTTCTAATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTGA
* * * * **
30909 AATGCTCTTATAAAC-AATCCTTATATCCAATGTGGCTAACATTTGGCTCGATGAATATAGATAT
258 GATGCTC-GAAAAACAAATCCTTATATCCAATATGGCTAACATTTGTTTCGATGAATATAGATAT
* * ** *
30973 TTCAAGGAGT-TTTTGCACTAAAAATCATGAAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAG
322 TTTAAGGAGTCTTTTGC-CT-AAAATCTTGAAAAATTGAGCCGGGGCTTTGGAACGCGTTGTTAG
* * ** *
31037 CCAAAAACCGTGATGGTTAGTACACGATTTCGGCAAAAAACTGACCCGAAAAGTATTTTCTCAAT
385 CCAAAAACCGTGATGGTTAGTACACAATATCGGGTAAAAACTGACCCGAAAA-TTTTTTCTCAAT
* * * * * * * * *
31102 TTTTTGCGACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGGCGGGCTTTTCACG
449 TTTTTGCCACAATACACAG-AAAAATATATAATTCAACGCCAAAAAAATTGACAGACATTTCGCG
** * * *
31167 CTTCTTATATCGTTTTTCTATTTTTTTAACTAATTTCTAATTAAATCGAAACAAGATGGAGATGC
513 CTTCAAATATCGTTTTTCCATTTTTTT--CCAA-AT-TAATT---T---------AT--A-AT--
* * * *
31232 TCGAAAAAAAAATCCTTGTATCTAATATTGCTGAGATTTGCTTCGATGAATACAG
557 T--------AAATCCTTGTATCGAATATTCCTGAGATTTGCTTCGATGAAAACAA
* *
31287 ATATTTCAAGGAATCTTTGCGCCAAGAAACATGCAAAATTGAGCCGGGGCTCCGCAACGCGTTTT
1 ATATTTCAAGGAATCTTTGCTCCAAGAAACATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTT
* * * *
31352 TAGCCAAAAACCGTGATGGTTAGTACATGATTTTGGCAAAAAACTGACCAGAAAAGTATTTTCTC
66 TAGCCAAAAACCGTGA-CG-TA-CAC-TGATTTCGGCAAAAAACTGACCCGAAAAGTATTTTCTC
31417 AATTTTTTGCCAGAACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCG-GACTTTC
127 AATTTTTTGCCAGAACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGAGACTTTC
31481 ACGCTTCTAATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTG
192 ACGCTTCTAATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTG
* * *
31546 AGATGCTCGAAAAAACAAATCCTTATATTCAATATTGCTAAGATTTGTTTCGATGAATATAGATA
257 AGATGCTCG-AAAAACAAATCCTTATATCCAATATGGCTAACATTTGTTTCGATGAATATAGATA
* * *
31611 TTTTAAGGAGTCTTTGCGCCAAAAATCTTGAAAAATTGAGCAGGGGCTTTGGAACGCGTTGTTAG
321 TTTTAAGGAGTCTTT-TGCCTAAAATCTTGAAAAATTGAGCCGGGGCTTTGGAACGCGTTGTTAG
* *
31676 TCAAAAACCGTGATGGTTAGTACACAATATCGGGTAAAAACTGAACCGAAAATTTTTTCCTCAAT
385 CCAAAAACCGTGATGGTTAGTACACAATATCGGGTAAAAACTGACCCGAAAATTTTTT-CTCAAT
* * * * *
31741 TTTTTGCCACAATACACAAAAAAATTTATAATTGAACGCCAAAAAAATTGACAAACATTTCGTGC
449 TTTTTGCCACAATACACAGAAAAATATATAATTCAACGCCAAAAAAATTGACAGACATTTCGCGC
*
31806 TTCAAATATCGTTTTTCCATTTTTTTCCGAATTAATTTATAATTAAATCCTTGTATCGAATATTC
514 TTCAAATATCGTTTTTCCATTTTTTTCCAAATTAATTTATAATTAAATCCTTGTATCGAATATTC
*
31871 CTGAGATTTGCTTTGATGAAAACAA
579 CTGAGATTTGCTTCGATGAAAACAA
* * *
31896 ATATTTCAAGGAATCTTTGCTCCAAGAAACATGCAAAATTGA-CTAGGGGCTCTGGAACACGTTT
1 ATATTTCAAGGAATCTTTGCTCCAAGAAACATGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTT
* * * * *
31960 TTAGCCAATAAAACGT-ACGTACACT-ATTACGGCTAAAAACTGACCCGAAAATTTTTTTCTCAA
65 TTAGCCAA-AAACCGTGACGTACACTGATTTCGGCAAAAAACTGACCCGAAAAGTATTTTCTCAA
32023 TTTTTTGCCAGAACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGAG-CTTTCAC
129 TTTTTTGCCAGAACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGAGACTTTCAC
* * * *
32087 GGTTCTAGTATCATTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAATCGAAATAAGATTGAG
194 GCTTCTAATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTGAG
*
32152 ATGCTCGAAAAACAAATCCTTATATCCAATATGGCTAATATTTGTTTCGATGAATATAGATATTT
259 ATGCTCGAAAAACAAATCCTTATATCCAATATGGCTAACATTTGTTTCGATGAATATAGATATTT
32217 TAAGGAGTCTTTATGCCTAAAATCTTGAAAAATTGAGCCGGGGCTTTGGAACGCGTTGTTAGCCA
324 TAAGGAGTCTTT-TGCCTAAAATCTTGAAAAATTGAGCCGGGGCTTTGGAACGCGTTGTTAGCCA
*
32282 AAAACCGTGATGGTTAGTACACAATATCGGGTAAAAACTGACCCGAAAATTTTTTCTTCAATTTC
388 AAAACCGTGATGGTTAGTACACAATATCGGGTAAAAACTGACCCGAAAATTTTTTC-TCAATTTT
* * *
32347 TTGCCACAATTCACAGAAAAATATATAATTCAACACCAAAAAAATTGACAGATATTTCGCGCTTC
452 TTGCCACAATACACAGAAAAATATATAATTCAACGCCAAAAAAATTGACAGACATTTCGCGCTTC
*
32412 AAATATCGTTTTTCCATTTTTTTTCCAAATTAATTTCTAATTAAATC
517 AAATATCGTTTTTCCA-TTTTTTTCCAAATTAATTTATAATTAAATC
32459 GAAACAAGAT
Statistics
Matches: 1046, Mismatches: 108, Indels: 66
0.86 0.09 0.05
Matches are distributed among these distances:
602 1 0.00
603 249 0.24
604 190 0.18
605 2 0.00
606 2 0.00
607 2 0.00
608 2 0.00
609 107 0.10
610 6 0.01
617 1 0.00
619 2 0.00
620 1 0.00
622 2 0.00
631 1 0.00
633 59 0.06
634 21 0.02
635 2 0.00
636 3 0.00
638 218 0.21
639 169 0.16
640 4 0.00
641 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (603 bp):
ATATTTCAAGGAATCTTTGCTCCAAGAAACATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTT
TAGCCAAAAACCGTGACGTACACTGATTTCGGCAAAAAACTGACCCGAAAAGTATTTTCTCAATT
TTTTGCCAGAACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGAGACTTTCACGC
TTCTAATATCATTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAAAAAGATTGAGAT
GCTCGAAAAACAAATCCTTATATCCAATATGGCTAACATTTGTTTCGATGAATATAGATATTTTA
AGGAGTCTTTTGCCTAAAATCTTGAAAAATTGAGCCGGGGCTTTGGAACGCGTTGTTAGCCAAAA
ACCGTGATGGTTAGTACACAATATCGGGTAAAAACTGACCCGAAAATTTTTTCTCAATTTTTTGC
CACAATACACAGAAAAATATATAATTCAACGCCAAAAAAATTGACAGACATTTCGCGCTTCAAAT
ATCGTTTTTCCATTTTTTTCCAAATTAATTTATAATTAAATCCTTGTATCGAATATTCCTGAGAT
TTGCTTCGATGAAAACAA
Found at i:32427 original size:320 final size:321
Alignment explanation
Indices: 31850--37860 Score: 6249
Period size: 320 Copynumber: 19.0 Consensus size: 321
31840 ATTTATAATT
* * * * * * * *
31850 AAATCCTTGTATCGAATATTCCTGAGATTTGCTTTGATGAAAACAAATATTTCAAGGAATCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * *
31915 CT-CCAAGAAA-CATGCAAAATTGA-CTAGGGGCTCTGGAACACGTTTTTAGCCAATAAAACGT-
66 -TGCCAA-AAATCATGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTG
* * * *
31976 A-----CGTACACTATTACGGCTAAAAACTGACCCGAAAATTTTTT-TCTCAATTTTTTGCCAGA
127 ATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCT-TCAATTTTTTGCCACA
* * * * * * *
32035 ACACTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGAGC-TTTCACGGTTCTAGTATC
191 ATACACAG-AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATC
* * *
32099 ATTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAATCGAAATAAGATTGAGATGCTCG-AAAA
255 GTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAA
32163 AC
320 AC
* * * * * *
32165 AAATCCTTATATCCAATATGGCTAATATTTGTTTCGATGAATATAGATATTTTAAGGAGTCTTTA
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * ** *
32230 TGCCTAAAATCTTGAAAAATTGAGCCGGGGCTTTGGAACGCGTTGTTAGCCAAAAACCGTGATGG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * * *
32295 TTAGTACACAATATCGGGTAAAAACTGACCCGAAAATTTTTTCTTCAATTTCTTGCCACAATTCA
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATACA
* * * * * *
32360 CAGAAAAATATATAATTCAACACCAAAAAAATTGAC-AGATATTTCGCGCTTCAAATATCGTTTT
196 CAGAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCT-TTTCACGCTTCTAATATCGTTTT
** *
32424 TCCATTTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGACG-TGCTTGAAAAAAC
260 TCCA-TTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAAAAC
* * *
32487 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATAAATATAGATATTTCACGGATTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
** * * * * * *
32552 CACTAAAAATCAAGCAAAATTGAGCCAGGGCTCCGGAACGCATTTTTAACCAAACACCGTGATGG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * * * *
32617 TTAGTACACGATTTCGACTAAAAACTTACCCG-AATTTTTATTTTTCAA-TTTTTGTCACAATAT
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTT-TTCTTCAATTTTTTGCCACAATAC
*
32680 ACAGAAAAAATATTTAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
195 ACAG-AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
* * *
32745 TT-C--TATTTT-T-AATTAATTTCTAATTAAATCGAAAAAAGATTTGAGATGCACGAAAAAAC
259 TTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
* * * *
32804 AAATCCTTGTATCTAATATTGCTGAGATTTGCTTCGATGAATATAAATATTTCAAGGAATCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * * * *
32869 TGCCAAGAATCATGCAAAATTGAGTCAGGGCTTCGGAACACGTTTTTTGCCAATAAAACATGATG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTGATG
* * *
32934 GTTAGTACACGATTTCGGCTAAAAACTGACCCGGAAA-TTTTTC-TCAATTTTTTGACACAACAC
130 GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATAC
* * * * *
32997 TCAGAAAAAATATATAATTCAATGCCAAAGAGATTGCCGGGCTTTTCACGCTTCTAATATCATTT
195 ACAG-AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
* *
33062 TCCCA-TTTTTTCAGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
259 TTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
* * ** *
33124 AAATCCTTATATCCAATATGGCTTAGATTTTTTTCGATGAATATAGATATTTGAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * ** ** *
33189 CGTCAAAAATCTTGAAAAACAGAGCCGGGGCTTTGGAACGCGTTTTTAACCAAAAACCGTGATGG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * *
33254 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTT-TCTCTATTTTTTTCAACAATAC
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCT-TCAATTTTTTGCCACAATAC
* * ** * *
33318 ACATAAAAAATATATAATTCAACGCCAAAAATATTGACATGCTTTTCACACTTCTAATATCGTCT
195 ACA-GAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
* * *
33383 TTCTATTTTTTTCTGAATTAATTTCTAATTTAATCGAAACAAGATTTGAGATGCTCGAGAAAAC
259 TTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
*
33447 AAATCCTTATATCCAATATTGCTGACATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * *
33512 TGCCAAAAATCATGCAAAAATGAGCTGAGGCTCCGGAA--C---TTTAGCCAAACACCGTGATTG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * * * * *
33572 TTAGTACTCGATTTCAGCTAAAAACTGATCCG-AATTTTTTTTTTCAATTTTTTGCTACAATAGA
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATACA
* *
33636 CAAAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCATGCTTCTAATATCGTTTT
196 C-AGAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTT
* * *
33701 T-C-TATTTTT-T-AATTAATTTCTAATTAAATC-AACACAAGCTTTGAGATGCACGAAAAAAC
260 TCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAA-ACAAG-ATTGAGATGCTCGAAAAAAC
* * * * ** *
33760 AAATCCTTGTATCTAATATTGATGAGATTTGCTTCGATGAATATAGTTACCTCAAGGAATCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * * *
33825 CGCCAAGAAA-CATGCAGAATTGA-CTCAGGGATCCGGAACACGTTTTTTGCCAATAAAACGTGA
66 TGCCAA-AAATCATGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTGA
*
33888 TGGTTAGTACACGATTTCGGCTAAAAACTGACTCGAAAATTTTTTCTTCAATTTTTTGCCACAAT
128 TGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAAT
* * * * * *
33953 ACACAGAAAAATATATAATCCAACACCAAAAAAATTGACAGACTGTTT-GCGCTTC-AA-A----
193 ACACAGAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCT-TTTCACGCTTCTAATATCGT
* *
34011 ---T--A------TC-G------CTTCTAATTAAATCGAAACAAGATTGACG-TGCTTGAAAAAA
257 TTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAAAA
34057 -
321 C
* * *
34057 AAATTCCTTATATCCAATATTGATGATATTTGCTTCGATGAATATAGATATTTCAAGGATTCTTT
1 AAA-TCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTT
* * * * * * * *
34122 GCGCTAAGACTCAAGCAAAATTGAGCCGGGGCTCGGGAACGCGTTTTTAACCAAACACCGTGATG
65 GTGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATG
* * * * *
34187 GTTAGTACACAATTTCGGCTAAAAACCGACCCG--ATTTTTTTTTTCAATTTTTTGCCACAATAT
130 GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATAC
*
34250 ATAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
195 ACAG-AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
* *
34315 TTCTA-TTTTTT-T-AATTAATTTCTAATTAAATCGAAACAAGATTTGAGATGCACGAAAAAAC
259 TTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
* * * * * * *
34376 AAATCCTTGTATCTAATACTGCTGAGATTTACTTCAATGAATATAGATATTTCAAGGAATCTTTA
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * ** * *
34441 CGCCAAGAATCATGCAAAATTGA-CTCAGGGCTCAGGAATACGTTTTTTGCCAATAAAACGTGAT
66 TGCCAAAAATCATGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTGAT
*
34505 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTC-TCAATTTTTTGCCACAACA
129 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATA
* * * * * *
34569 CTCAGAAAAAATATATAATTCAACGCCAAACAGATTGCCGGGCTTTTAATGCTTCTAATATCATT
194 CACAG-AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTT
** * * * *
34634 TTTCCA-TTTTTTCAAAATTTAGTTTCTAACTAAATCGAAGCAAGATTGAGATGCTTGAAAAAAA
258 TTTCCATTTTTTTCTGAA-TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAA
*
34698 T
321 C
* * * *
34699 AAATCCTTATATCCAATATGGCTAAGATTT-TTTCGATGAATATAGATATTTGAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * ** *
34763 CGCCAAAAATCTTGAAAAAATGAGCCGGGGCTTTGGAACGCGTTTTAAGCCAAAAACCGTGATGG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * * *
34828 TTAGTACACAATATCGGCTAAAAATTGTCCCGAAAATTTTTTCCTCAATTTTTTTGCCACAATAC
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAA-TTTTTTGCCACAATAC
* * *** * *
34893 ACA-AAAAA-A-A-AAATCAACACCAAAAA-ATTGACAAACATTTCGCGCTTCTAATATCGTTTT
195 ACAGAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTT
* * * *
34953 TCCATTTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTGACATGCTTGAAAAAAC
260 TCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
* * * *
35015 AAATCCGTATATCCAATATTGCTGAGATTTGCTTCGATAAATATAGATATTTCACGGATTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
** * * * * * *
35080 CACTAAAAATCAAGCAAAATTAAGCCGGGGCTCCGGAACGCATTTTTAACCAAACACCGTGATGG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * * * * * *
35145 TTAGTACACGATTTCAGCTAAAAATTTA-CC-AGATTTTTTTTTTCAATTTTTTGTCACAATATA
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATACA
*
35208 CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCATTTT
196 CAG-AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTT
* * * *
35273 TCTA-TTTTTT-T-AATTAATTTCAAATTAAATCGAAATAAGATTTGAGATGCACGAAAAAAC
260 TCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
* * * *
35333 AAATCCTTGTATCTAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGCAATCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
** * * * * * * *
35398 CACCAAGAATCATGCAAAATTGA-CTCAGGGATCTGGAACACGTTTTTTGCCAATAAAACGTGAT
66 TGCCAAAAATCATGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTGAT
* * *
35462 GGTTAGTACACGATTTCGGCTAAAAATTGACCCGAAAA-GTTTTC-TCAATTTTTTGCCACAACA
129 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATA
* * * * * * *
35525 CTCAGAAAAAATATACAATTCAATGCCAAAGAGATTGCCAGGCTTTTCACGCTTCTAATATCATT
194 CACAG-AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTT
*
35590 TTTCCATTTTTTTCTGAATTAATTTCAAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
258 TTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
* * * * * *
35654 AAATCCTTATATCCAATATGGCTAAGATTT-TTCTCAATGAATATAGATATTTGAAAGAGTCTTT
1 AAATCCTTATATCCAATATTGCTGAGATTTGCT-TCGATGAATATAGATATTTCAAGGAGTCTTT
* * * * ** * *
35718 GCGCCAAAATTC-TTCAAAAATTGAACCGGGGCTTTGGAACGCGTATTGAGCCAAAAACCGTGAT
65 GTGCCAAAAATCATGC-AAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * * * *
35782 GGTTAGTACACAATATCGGCTAAAAACTGACCCAAAAATTGTTTCCTCAATTTTTTGCCATAATA
129 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATA
*
35847 CAC--AAAAA-A-A-AATTCAA---C------ATT-TC--G----T---GCTTCTAATATCGTTT
194 CACAGAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
* *
35888 TTCCA-TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGACG-TGCTTGAAAAAAC
259 TTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAAAAC
*
35950 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGATTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * * * * * *
36015 CGCTAAGACTCAAGCAAAATTGAGCCGGGGCTCCGGGACGCGTTTTTAACCGAAAACTGTGATTG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* *
36080 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACATTAC
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCT-TCAATTTTTTGCCACAATAC
* * ** * *
36145 ACATAAAAAATATATAATTCAACGCCAAAAATATTGACTTGCTTTTCACACTTCTAATATCGTCT
195 ACA-GAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
* * *
36210 TT-CTTCTTTTTTCTGAATTAATTTCTAATTTAATCGAAACAAGATTTGAGATGCTCGAGAAAAC
259 TTCCAT-TTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
* * *
36274 AAATCCTTATATCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTGAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * *
36339 TGCCAAAAATCATACAAAAATGAGCTGAGGCTCCGGAA--C---TTTAGCCAAACACCGTGATTG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* ** * *** *
36399 TTAGTACTCGATTTCAACTAAAAACTTATTTG--AATTTTTTTTTCAATTTTTTGCCACAATACA
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATACA
* *
36462 CAAAAAATATATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCATGCTTCTAATATCGTT
196 C-AGAAA-A-ATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTT
* * *
36527 TTT-C-TATTTTT-T-AATTAATTTCTAATTAAATCGACACAAGATTTGAGATGCACGAAAAAAC
258 TTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
* * * * *
36588 AAATCCTTGTATCTAATATTGCTGAGATTTGCTTAGATGAATATAGATATTTCAAGAAATCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
** * * * * * *
36653 CACCAAGAATCATGCAAAATTGA-CTCTGGGCTCCAGAACACGTTTTTACCCAATAAAACGTGAT
66 TGCCAAAAATCATGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTGAT
* * * * ** * *
36717 GGTTATTACACGATTTCGACTAAAAACTGACCCG-AATTTTTTTTTCTCAATTTTTAACTACAAC
129 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCT-TCAATTTTTTGCCACAAT
* * * * * *
36781 ACTCATAACAAATATATAATTCAACGCCAAAGAGATTGCCGGGCTTTTCACGCATCCT-ATATCA
193 ACACAGAA-AAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGC-TTCTAATATCG
* * *
36845 TTTTTCCATATTTTTCTGAATTCATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCGAAAAAA
256 TTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA
36910 C
321 C
* * * * ** * * *
36911 AAATCCATATATTCAATATGGCTAAGATTTTTTTTGATGAATATAAATATTTTAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * **
36976 CGTCAAAAATC-TAGAAAAATTGAGCCCGGGATTTGGAACGCGTTTTTAGCCAAAAACCGTGATG
66 TGCCAAAAATCAT-GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATG
* *
37040 GTTAGTACGTACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTC-TCAATTTTTTGCCACT
130 G-T--TA-GTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACA
* * * *** * * **
37104 ATACACA-AAAAA-ATATAATTTAACACCAAAAAAAATTGACAAACATTCCGTGCTTCTAATATC
191 ATACACAGAAAAATATATAATTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATC
** *
37167 GTTTTTCCATTTTTTTTCCAAATTAATTTCTGATTAAATCGAAACAAGATTGACG-TGCTCGAAA
255 GTTTTTCCA-TTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAA
37231 AAAC
318 AAAC
* *
37235 AAATCCTTATAGCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGATTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * * *
37300 TGCTAAAAATCAAGCAAAATCGAGCTGGAGCTTCGGAACGCGTTTTTAACCAAAAACCGTGATGG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * *
37365 TTAGTACACGATTTCGGCTAAAAATTAACCAGAAAATTTTTTTCTT-AATTTTTTGCCACAATA-
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTCTTCAATTTTTTGCCACAATAC
*** * * * * * * *
37428 TTTGTAAAAAATATATATTTCAATGCCAAAAATATTTACAGGCTTTTCATGCTTCTAATATCATT
195 ACAG--AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTT
* * *
37493 TTTCTATTTTTTT-TGAATTAATTTCTAATTCAATC--AAGAAGATTTGAGATGCTCGAAAAAAC
258 TTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
* * * *
37555 AAATCCTTATATCCAATATTGTTGACATTTGGTTCGATGAATATAAATATTTCAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* *
37620 TGCCAAAAATCATACAAAATTGAGCCGGGGCTCCGGAA--C---TTTAGCCAAACACCGTGATGG
66 TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
** *
37680 TTAGTACACGATTTCGGCT-AAAACATGACCCG-ATTTTTTTTTTTCAATTTTTTGCCACAATAC
131 TTAGTACACGATTTCGGCTAAAAAC-TGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATAC
* * *
37743 ATAGAAAAAATATATCATTCAATGATGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG
195 ACAG-AAAAATATATAATTC-A--ACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG
*
37808 TTTTT-C-TATTTTT-T-AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCT
256 TTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCT
Statistics
Matches: 4742, Mismatches: 760, Indels: 388
0.81 0.13 0.07
Matches are distributed among these distances:
295 33 0.01
296 233 0.05
297 88 0.02
298 108 0.02
299 20 0.00
300 8 0.00
301 1 0.00
302 1 0.00
303 7 0.00
304 2 0.00
305 1 0.00
306 2 0.00
307 4 0.00
310 1 0.00
312 7 0.00
313 134 0.03
314 215 0.05
315 174 0.04
316 118 0.02
317 550 0.12
318 409 0.09
319 399 0.08
320 622 0.13
321 405 0.09
322 447 0.09
323 399 0.08
324 300 0.06
325 20 0.00
326 26 0.01
327 8 0.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (321 bp):
AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
TGCCAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTTCAATTTTTTGCCACAATACA
CAGAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTT
CCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
Found at i:33073 original size:637 final size:637
Alignment explanation
Indices: 31850--37860 Score: 6348
Period size: 637 Copynumber: 9.5 Consensus size: 637
31840 ATTTATAATT
* * * * * * * *
31850 AAATCCTTGTATCGAATATTCCTGAGATTTGCTTTGATGAAAACAAATATTTCAAGGAATCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * *
31915 CTCCAAGAAA-CATGCAAAATTGA-CTAGGGGCTCTGGAACACGTTTTTAGCCAATAAAACGT-A
66 CGCCAA-AAATCAAGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTGA
* * * * *
31977 -----CGTACACTATTACGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCAGAAC
128 TGGTTAGTACACGATTTCGGCTAAAAACTGACCCG-AAATTTTTTTCTCAATTTTTTGCCACAAT
* * * * * *
32037 ACT-CAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGAGC-TTTCACGGTTCTAGTATCA
192 A-TACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG
* * *
32100 TTTTTCCATTTTTTTCTGAATTAATTTCGAATTAAATCGAAATAAGATTGAGATGCTCG-AAAAA
256 TTTTTCTA-TTTTTTC--AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA
* * * * * *
32164 CAAATCCTTATATCCAATATGGCTAATATTTGTTTCGATGAATATAGATATTTTAAGGAGTCTTT
318 CAAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTT
** * * * *
32229 ATGCCTAA-AATCTTGAAAAATTGAGCCGGGGCTTTGGAACGCGTTGTTAGCCAAAAACCGTGAT
383 GCGCC-AAGAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * * *
32293 GGTTAGTACACAATATCGGGTAAAAACTGACCCGAAAATTTTTTCTTCAATTTCTTGCCACAATT
447 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTC-TCAATTTTTTGCCACAATA
* * * * * * *
32358 CACAG-AAAAATATATAATTCAACACCAAAAAAATTGAC-AGATATTTCGCGCTTCAAATATCGT
510 CTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCT-TTTCACGCTTCTAATATCGT
** *
32421 TTTTCCATTTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGACG-TGCTTGAAAAA
574 TTTTCCA--TTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAAA
32485 AC
636 AC
* * *
32487 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATAAATATAGATATTTCACGGATTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * *
32552 CACTAAAAATCAAGCAAAATTGAGCCAGGGCTCCGGAACGCATTTTTAACCAAACACCGTGATGG
66 CGCCAAAAATCAAGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * * *
32617 TTAGTACACGATTTCGACTAAAAACTTACCCGAATTTTTATTTTTCAA-TTTTTGTCACAATATA
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTT-TTTCTCAATTTTTTGCCACAATATA
*
32681 CAGAAAAAATATTTAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTT
195 CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTT
* *
32746 TCTA-TTTTT-AATTAATTTCTAATTAAATCGAAAAAAGATTTGAGATGCACGAAAAAACAAATC
260 TCTATTTTTTCAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAACAAATC
* * * *
32809 CTTGTATCTAATATTGCTGAGATTTGCTTCGATGAATATAAATATTTCAAGGAATCTTTGTGCCA
324 CTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTTGCGCCA
* * * * * *
32874 AGAATCATGCAAAATTGAGTCAGGGCTTCGGAACACGTTTTTTGCCAATAAAACATGATGGTTAG
389 AGAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTAGCCAA-AAACCGTGATGGTTAG
* * *
32939 TACACGATTTCGGCTAAAAACTGACCCGGAAATTTTTCTCAATTTTTTGACACAACACTCAGAAA
453 TACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTCTCAATTTTTTGCCACAATACTCAGAAA
* * * * *
33004 AAATATATAATTCAATGCCAAAGAGATTGCCGGGCTTTTCACGCTTCTAATATCATTTTCCCATT
518 AAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATT
*
33069 TTTTCAGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
583 TTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
* * ** *
33124 AAATCCTTATATCCAATATGGCTTAGATTTTTTTCGATGAATATAGATATTTGAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* ** * ** ** *
33189 CGTCAAAAATCTTGAAAAACAGAGCCGGGGCTTTGGAACGCGTTTTTAACCAAAAACCGTGATGG
66 CGCCAAAAATCAAGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * *
33254 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCTATTTTTTTCAACAATACA
131 TTAGTACACGATTTCGGCTAAAAACTGACCCG-AAATTTTTTTCTCAATTTTTTGCCACAATATA
* * ** * *
33319 CATAAAAAATATATAATTCAACGCCAAAAATATTGACATGCTTTTCACACTTCTAATATCGTCTT
195 CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTT
* *
33384 TCTATTTTTTTCTGAATTAATTTCTAATTTAATCGAAACAAGATTTGAGATGCTCGAGAAAACAA
260 TCTA-TTTTTTC--AATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAACAA
* * *
33449 ATCCTTATATCCAATATTGCTGACATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTGTG
321 ATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTTGCG
* * * * * * *
33514 CCAAAAATCATGCAAAAATGAGCTGAGGCTCCGGAA--C---TTTAGCCAAACACCGTGATTGTT
386 CCAAGAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTT
* * * ** * * ** *
33574 AGTACTCGATTTCAGCTAAAAACTGATCCGAATTTTTTTTTTCAATTTTTTGCTACAATAGACAA
451 AGTACACGATTTCGGCTAAAAACTGACCCGAA-AATTTTTCTCAATTTTTTGCCACAATACTCAG
* *
33639 AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCATGCTTCTAATATCGTTTTTCT
515 AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCC
* *
33704 A-TTTTT-T-AATTAATTTCTAATTAAATC-AACACAAGCTTTGAGATGCACGAAAAAAC
580 ATTTTTTCTGAATTAATTTCTAATTAAATCGAA-ACAAG-ATTGAGATGCTCGAAAAAAC
* * * * ** *
33760 AAATCCTTGTATCTAATATTGATGAGATTTGCTTCGATGAATATAGTTACCTCAAGGAATCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * * *
33825 CGCCAAGAAA-CATGCAGAATTGA-CTCAGGGATCCGGAACACGTTTTTTGCCAATAAAACGTGA
66 CGCCAA-AAATCAAGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTGA
* *
33888 TGGTTAGTACACGATTTCGGCTAAAAACTGACTCGAAAATTTTTTCTTCAATTTTTTGCCACAAT
128 TGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTC-TCAATTTTTTGCCACAAT
* * * * * * * *
33953 ACACAG-AAAAATATATAATCCAACACCAAAAAAATTGACAGACTGTTT-GCGCTTCAAATATCG
192 ATACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCT-TTTCACGCTTCTAATATCG
*
34016 --------------C-------TTCTAATTAAATCGAAACAAGATTGACG-TGCTTGAAAAAA-A
256 TTTTTCTATTTTTTCAATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAAAACA
* * *
34058 AATTCCTTATATCCAATATTGATGATATTTGCTTCGATGAATATAGATATTTCAAGGATTCTTTG
320 AA-TCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTTG
* * * * *
34123 CGCTAAGACTCAAGCAAAATTGAGCCGGGGC-TCGGGAACGCGTTTTTAACCAAACACCGTGATG
384 CGCCAAGAATCATGCAAAATTGAGCCGGGGCTTC-GGAACGCGTTTTTAGCCAAAAACCGTGATG
* * *** *
34187 GTTAGTACACAATTTCGGCTAAAAACCGACCCGATTTTTTTTTTCAATTTTTTGCCACAATA-TA
448 GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTCTCAATTTTTTGCCACAATACT-
*
34251 TAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTT
512 CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTT
* *
34316 TCTATTTTTT-T-AATTAATTTCTAATTAAATCGAAACAAGATTTGAGATGCACGAAAAAAC
577 TCCATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
* * * * * * *
34376 AAATCCTTGTATCTAATACTGCTGAGATTTACTTCAATGAATATAGATATTTCAAGGAATCTTTA
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * ** * *
34441 CGCCAAGAATCATGCAAAATTGA-CTCAGGGCTCAGGAATACGTTTTTTGCCAATAAAACGTGAT
66 CGCCAAAAATCAAGCAAAATTGAGC-CGGGGCTCCGGAACGCGTTTTTAGCCAA-AAACCGTGAT
* *
34505 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTCAATTTTTTGCCACAACAC
129 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTCTCAATTTTTTGCCACAATA-
* * * * *
34570 T-CAGAAAAAATATATAATTCAACGCCAAACAGATTGCCGGGCTTTTAATGCTTCTAATATCATT
193 TACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTT
* * * * * *
34634 TTTCCATTTTTTCAAAATTTAGTTTCTAACTAAATCGAAGCAAGATTGAGATGCTTGAAAAAAAT
258 TTTCTATTTTTTC--AA-TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAAC
* * * * *
34699 AAATCCTTATATCCAATATGGCTAAGATTT-TTTCGATGAATATAGATATTTGAAGGAGTCTTTG
319 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTTG
* * * * * *
34763 CGCCAAAAATCTTGAAAAAATGAGCCGGGGCTTTGGAACGCGTTTTAAGCCAAAAACCGTGATGG
384 CGCCAAGAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * *
34828 TTAGTACACAATATCGGCTAAAAATTGTCCCGAAAATTTTTTCCTCAATTTTTTTGCCACAATAC
449 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTT-CTCAA-TTTTTTGCCACAATAC
* * *** * *
34893 ACA-AAAAAA-A-A-AA-TCAACACCAAAAA-ATTGACAAACATTTCGCGCTTCTAATATCGTTT
511 TCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
* * *
34952 TTCCATTTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTGACATGCTTGAAAAAAC
576 TTCCATTTTTT-CTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
* * * *
35015 AAATCCGTATATCCAATATTGCTGAGATTTGCTTCGATAAATATAGATATTTCACGGATTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * *
35080 CACTAAAAATCAAGCAAAATTAAGCCGGGGCTCCGGAACGCATTTTTAACCAAACACCGTGATGG
66 CGCCAAAAATCAAGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* * * * * * *
35145 TTAGTACACGATTTCAGCTAAAAATTTACCAG-ATTTTTTTTTTCAATTTTTTGTCACAATATAC
131 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTCTCAATTTTTTGCCACAATATAC
*
35209 AGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCATTTTT
196 AGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTT
* * * *
35274 CTATTTTTTTAATTAATTTCAAATTAAATCGAAATAAGATTTGAGATGCACGAAAAAACAAATCC
261 CTATTTTTTCAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAACAAATCC
* * * *
35339 TTGTATCTAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGCAATCTTTGCACCAA
325 TTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTTGCGCCAA
* * * * *
35404 GAATCATGCAAAATTGA-CTCAGGG-ATCTGGAACACGTTTTTTGCCAATAAAACGTGATGGTTA
390 GAATCATGCAAAATTGAGC-CGGGGCTTC-GGAACGCGTTTTTAGCCAA-AAACCGTGATGGTTA
* * *
35467 GTACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTCTCAATTTTTTGCCACAACACTCAGAA
452 GTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTCTCAATTTTTTGCCACAATACTCAGAA
* * * * * *
35532 AAAATATACAATTCAATGCCAAAGAGATTGCCAGGCTTTTCACGCTTCTAATATCATTTTTCCAT
517 AAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCA-
*
35597 TTTTTTCTGAATTAATTTCAAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
581 TTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
* * * * * *
35654 AAATCCTTATATCCAATATGGCTAAGATTT-TTCTCAATGAATATAGATATTTGAAAGAGTCTTT
1 AAATCCTTATATCCAATATTGCTGAGATTTGCT-TCGATGAATATAGATATTTCAAGGAGTCTTT
* ** * ** * *
35718 GCGCCAAAATTC-TTCAAAAATTGAACCGGGGCTTTGGAACGCGTATTGAGCCAAAAACCGTGAT
65 GCGCCAAAAATCAAGC-AAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * * * *
35782 GGTTAGTACACAATATCGGCTAAAAACTGACCCAAAAATTGTTTCCTCAATTTTTTGCCA-TA-A
129 GGTTAGTACACGATTTCGGCTAAAAACTGACCC-GAAATTTTTTTCTCAATTTTTTGCCACAATA
* *
35845 TACA-CAAAAA-A-A-AATTCAA---C------ATT-TC--G----T---GCTTCTAATATCGTT
193 TACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTT
* *
35887 TTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGACG-TGCTTGAAAAAACA
258 TTTCTATTTTTT-C-AATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAAAACA
*
35951 AATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGATTCTTTGC
320 AATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTTGC
* * * * * * * * *
36016 GCTAAGACTCAAGCAAAATTGAGCCGGGGCTCCGGGACGCGTTTTTAACCGAAAACTGTGATTGT
385 GCCAAGAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTAGCCAAAAACCGTGATGGT
* *
36081 TAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACATTACA
450 TAGTACACGATTTCGGCTAAAAACTGACCCGAAAA---TTTTTCTCAATTTTTTGCCACAATACT
* * ** *
36146 CATAAAAAATATATAATTCAACGCCAAAAATATTGACTTGCTTTTCACACTTCTAATATCGTCTT
512 CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGT-TT
* * *
36211 TCTTC-TTTTTTCTGAATTAATTTCTAATTTAATCGAAACAAGATTTGAGATGCTCGAGAAAAC
576 T-TCCATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAAC
* * *
36274 AAATCCTTATATCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTGAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * *
36339 TGCCAAAAATCATA-CAAAAATGAGCTGAGGCTCCGGAA--C---TTTAGCCAAACACCGTGATT
66 CGCCAAAAATCA-AGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATG
* ** * *** * *
36398 GTTAGTACTCGATTTCAACTAAAAACTTATTTG-AATTTTTTTTTCAATTTTTTGCCACAATACA
130 GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTCTCAATTTTTTGCCACAATATA
* *
36462 CAAAAAATATATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCATGCTTCTAATATCGTT
195 CAGAAAA-A-ATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTT
* *
36527 TTTCTATTTTTT-AATTAATTTCTAATTAAATCGACACAAGATTTGAGATGCACGAAAAAACAAA
258 TTTCTATTTTTTCAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAACAAA
* * * * *
36591 TCCTTGTATCTAATATTGCTGAGATTTGCTTAGATGAATATAGATATTTCAAGAAATCTTTGCAC
322 TCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTTGCGC
* * * * * *
36656 CAAGAATCATGCAAAATTGA-CTCTGGGCTCCAGAACACGTTTTTACCCAATAAAACGTGATGGT
387 CAAGAATCATGCAAAATTGAGC-CGGGGCTTCGGAACGCGTTTTTAGCCAA-AAACCGTGATGGT
* * ** ** * *
36720 TATTACACGATTTCGACTAAAAACTGACCCGAATTTTTTTTTCTCAATTTTTAACTACAACACTC
450 TAGTACACGATTTCGGCTAAAAACTGACCCGAA--AATTTTTCTCAATTTTTTGCCACAATACTC
* * * * * *
36785 ATAACAAATATATAATTCAACGCCAAAGAGATTGCCGGGCTTTTCACGCATCCT-ATATCATTTT
513 AGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGC-TTCTAATATCGTTTT
* *
36849 TCCATATTTTTCTGAATTCATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCGAAAAAAC
577 TCCAT-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
* * * * ** * * *
36911 AAATCCATATATTCAATATGGCTAAGATTTTTTTTGATGAATATAAATATTTTAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * **
36976 CGTCAAAAATCTAGAAAAATTGAGCCCGGGATTTGGAACGCGTTTTTAGCCAAAAACCGTGATGG
66 CGCCAAAAATCAAGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
* *
37041 TTAGTACGTACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTCAATTTTTTGCCAC--T
131 -T--TA-GTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTCTCAATTTTTTGCCACAAT
* * * * *** * * **
37104 ATACACAAAAAA-ATATAATTTAACACCAAAAAAAATTGACAAACATTCCGTGCTTCTAATATCG
192 ATACAGAAAAAATATATAATTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG
* *
37168 TTTTTCCATTTTTTTTCCAAATTAATTTCTGATTAAATCGAAACAAGATTGACG-TGCTCGAAAA
256 TTTTT-C-TATTTTTT-C-AATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAA
* *
37232 AACAAATCCTTATAGCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGATTCT
316 AACAAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCT
* * * * * * * *
37297 TTGTGCTAAAAATCAAGCAAAATCGAGCTGGAGCTTCGGAACGCGTTTTTAACCAAAAACCGTGA
381 TTGCGCCAAGAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTAGCCAAAAACCGTGA
* * * *
37362 TGGTTAGTACACGATTTCGGCTAAAAATTAACCAGAAAATTTTTTTCTTAATTTTTTGCCACAAT
446 TGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAA--TTTTTCTCAATTTTTTGCCACAAT
** * * * * * * *
37427 A-TTTGTAAAAAATATATATTTCAATGCCAAAAATATTTACAGGCTTTTCATGCTTCTAATATCA
509 ACTCAG-AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG
* * * *
37491 TTTTTCTATTTTTTTTGAATTAATTTCTAATTCAATC--AAGAAGATTTGAGATGCTCGAAAAAA
573 TTTTTCCATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAA
37554 C
637 C
* * * *
37555 AAATCCTTATATCCAATATTGTTGACATTTGGTTCGATGAATATAAATATTTCAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
* *
37620 TGCCAAAAATCATA-CAAAATTGAGCCGGGGCTCCGGAA--C---TTTAGCCAAACACCGTGATG
66 CGCCAAAAATCA-AGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATG
** * *
37679 GTTAGTACACGATTTCGGCT-AAAACATGACCCGATTTTTTTTTTTCAATTTTTTGCCACAATAC
130 GTTAGTACACGATTTCGGCTAAAAAC-TGACCCGAAATTTTTTTCTCAATTTTTTGCCACAATAT
* * *
37743 ATAGAAAAAATATATCATTCAATGATGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG
194 ACAGAAAAAATATATAATTC-A--ACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG
37808 TTTTTCTATTTTTT-AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCT
256 TTTTTCTATTTTTTCAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCT
Statistics
Matches: 4494, Mismatches: 695, Indels: 372
0.81 0.12 0.07
Matches are distributed among these distances:
610 4 0.00
611 100 0.02
612 22 0.00
613 22 0.00
614 1 0.00
615 162 0.04
616 368 0.08
617 116 0.03
618 32 0.01
619 113 0.03
620 104 0.02
621 12 0.00
623 1 0.00
624 1 0.00
625 1 0.00
626 3 0.00
630 4 0.00
631 1 0.00
632 1 0.00
633 18 0.00
634 75 0.02
635 198 0.04
636 221 0.05
637 706 0.16
638 505 0.11
639 551 0.12
640 294 0.07
641 113 0.03
642 101 0.02
643 194 0.04
644 104 0.02
645 48 0.01
646 133 0.03
647 136 0.03
648 29 0.01
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (637 bp):
AAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTG
CGCCAAAAATCAAGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGG
TTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTCTCAATTTTTTGCCACAATATAC
AGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTT
CTATTTTTTCAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCT
TATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAATCTTTGCGCCAAG
AATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAA
TATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCATTTTT
TCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAC
Found at i:37820 original size:961 final size:954
Alignment explanation
Indices: 31850--37860 Score: 5318
Period size: 957 Copynumber: 6.3 Consensus size: 954
31840 ATTTATAATT
* * * * * * * *
31850 AAATCCTTGTATCGAATATTCCTGAGATTTGCTTTGATGAAAACAAATATTTCAAGGAATCTTTG
1 AAATCCTTATATCCAATATTGCTGACATTTGCTTAGATGAATATAAATATTTCAAGAAATCTTTG
* * * ** *
31915 CTCCAAGAAA-CATGCAAAATTGACTAGGGGCTCTGGAACACGTTTTTAGCCAATAAAACGT-A-
66 CACCAA-AAATCATACAAAATTGACTCGGGGCTCCAGAACAC--TTTTACCCAATAAAACGTGAT
* * * * ** ** *
31977 ----CGTACACTATTACGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCAGAACA
128 GGTTAGTACACGATTTCGACTAAAAACTGACCCGAATTTTTTTTTCTCAATTTTTAACCACAACA
* * * * * *
32038 CTCAGAAAAAATATATAATTCAACGCCAAAGAGATTGCCGAGC-TTTCACGGTTCTAGTATCATT
193 CTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTT
* * *
32102 TTTCCATTTTTTTCTGAATTAATTTCGAATTAAATCGAAATAAGATTGAGATGCTCG-AAAAACA
258 TTT-C-TATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACA
* * * * *
32166 AATCCTTATATCCAATATGGCTAATATTTGTTTCGATGAATATAGATATTTTAAGGAGTCTTTAT
321 AATCCATATATCCAATATGGCTAAGATTTGCTTCGATGAATATAAATATTTCAAGGAGTC-TT-T
** * * ** * *
32231 GC-CT-AAAATCTTGAAAAATTGAGCCGGGGCTTTGGAACGCGTTGTTAGCCAAAAACCGTGATG
384 GCGCTAAAAATCAAGAAAAATTGAGCCCGGGATCCGGAACGCGTTTTTAACCAAAAACCGTGATG
* * *
32294 GTTAGTACACAATATCGGGTAAAAACTGACCCGAAAA-TTTTTTCTTCAATTTCTTGCCACAATT
449 GTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTC-TCAATTTTTTGCCAC-ATT
* * * * * * * *
32358 -CACAGAAAAATATATAATTCAACACCAAAAAAATTGACAGATATTTCGCGCTTCAAATATCGTT
512 ACACAAAAAAATATATAATTCAACACCAAAAAAATTGACAAACATTCCACACTTCTAATATCGTC
*
32422 TTTCCATT-TTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGA-TTGACG-TGCTTGAAAA
577 TTT-C-TTCTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTTGA-GATGCTCGAAAA
* * * * * *
32484 AACAAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATAAATATAGATATTTCACGGATTCT
639 AACAAATCCTTATAGCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTCAAGGAGTCT
** * * * *
32549 TTGCACTAAAAATCA-AGCAAAATTGAGC-CAGGGCTCCGGAACGCATTTTTAACCAAACACCGT
704 TTGTGCCAAAAATCATA-CAAAAATGAGCTGA-GGCTCCGGAA--C---TTTAACCAAAAACCGT
* * *
32612 GATGGTTAGTACACGATTTCGACTAAAAACTTACCCGAATTTTTATTTTTCAA-TTTTTGTCACA
762 GATGGTTAGTACACGATTTCAACTAAAAACTTACCAGAA-TTTT-TTTTTCAATTTTTTGCCACA
* * * *
32676 ATATACAGAAAAA-ATATTTA-ATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATA
825 ATACACA-AAAAATATATATATATTCAACGCCAAAAAGATTGACAGGCTTTTCATGCTTCTAATA
* * *
32739 TCGTTTTTCTA-TTTTTAATTAATTTCTAATTAAATCGAAAAAAGATTTGAGATGCACGAAAAAA
889 TCATTTTTCTATTTTTTAATTAATTTCTAATTAAATCGACACAAGATTTGAGATGCACGAAAAAA
32803 C
954 C
* * * * *
32804 AAATCCTTGTATCTAATATTGCTGAGATTTGCTTCGATGAATATAAATATTTCAAGGAATCTTTG
1 AAATCCTTATATCCAATATTGCTGACATTTGCTTAGATGAATATAAATATTTCAAGAAATCTTTG
** * * * * * * ** *
32869 TGCCAAGAATCATGCAAAATTGAGTCAGGGCTTCGGAACACGTTTTTTGCCAATAAAACATGATG
66 CACCAAAAATCATACAAAATTGACTCGGGGCTCCAGAACAC--TTTTACCCAATAAAACGTGATG
* * *
32934 GTTAGTACACGATTTCGGCTAAAAACTGACCCGGAA---ATTTTTCTCAATTTTTTGA-CACAAC
129 GTTAGTACACGATTTCGACTAAAAACTGACCC-GAATTTTTTTTTCTCAA-TTTTTAACCACAAC
* * * *
32995 ACTCAGAAAAAATATATAATTCAATGCCAAAGAGATTGCCGGGCTTTTCACGCTTCTAATATCAT
192 ACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGT
* * *
33060 TTTCCCATTTTTTCAGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACA
257 TTTTCTA-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACA
* * ** * *
33125 AATCCTTATATCCAATATGGCTTAGATTTTTTTCGATGAATATAGATATTTGAAGGAGTCTTTGC
321 AATCCATATATCCAATATGGCTAAGATTTGCTTCGATGAATATAAATATTTCAAGGAGTCTTTGC
** ** * * **
33190 G-TCAAAAATCTTGAAAAACAGAGCCGGGGCTTTGGAACGCGTTTTTAACCAAAAACCGTGATGG
386 GCT-AAAAATCAAGAAAAATTGAGCCCGGGATCCGGAACGCGTTTTTAACCAAAAACCGTGATGG
* * * * *
33254 TTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCTATTTTTTTCAACAATACA
450 TTAGTACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACATTACA
* * ** * *
33319 CATAAAAAATATATAATTCAACGCCAAAAATATTGACATGCTTTTCACACTTCTAATATCGTCTT
515 CA-AAAAAATATATAATTCAACACCAAAAAAATTGACAAACATTCCACACTTCTAATATCGTCTT
** * *
33384 TCTAT-TTTTTTCTGAATTAATTTCTAATTTAATCGAAACAAGATTTGAGATGCTCGAGAAAACA
579 TCT-TCTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTTGAGATGCTCGAAAAAACA
* *
33448 AATCCTTATATCCAATATTGCTGACATTTGCTTCGATGAATATAGATATTTCAAGGAGTCTTTGT
643 AATCCTTATAGCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTCAAGGAGTCTTTGT
* * * *
33513 GCCAAAAATCATGCAAAAATGAGCTGAGGCTCCGGAACTTTAGCCAAACACCGTGATTGTTAGTA
708 GCCAAAAATCATACAAAAATGAGCTGAGGCTCCGGAACTTTAACCAAAAACCGTGATGGTTAGTA
* * * * *
33578 CTCGATTTCAGCTAAAAACTGATCC-GAATTTTTTTTTTCAATTTTTTGCTACAATAGACAAAAA
773 CACGATTTCAACTAAAAACTTA-CCAGAA-TTTTTTTTTCAATTTTTTGCCACAATACACAAAAA
* * *
33642 AAATATATA-ATTCAACGCCAAAAAGATTGACGGGCTTTTCATGCTTCTAATATCGTTTTTCTAT
836 ATATATATATATTCAACGCCAAAAAGATTGACAGGCTTTTCATGCTTCTAATATCATTTTTCTAT
* *
33706 TTTTTAATTAATTTCTAATTAAATCAACACAAGCTTTGAGATGCACGAAAAAAC
901 TTTTTAATTAATTTCTAATTAAATCGACACAAGATTTGAGATGCACGAAAAAAC
* * * * * ** ** *
33760 AAATCCTTGTATCTAATATTGATGAGATTTGCTTCGATGAATATAGTTACCTCAAGGAATCTTTG
1 AAATCCTTATATCCAATATTGCTGACATTTGCTTAGATGAATATAAATATTTCAAGAAATCTTTG
* * * * * * **
33825 CGCCAAGAAA-CATGCAGAATTGACTCAGGGATCCGGAACACGTTTTTTGCCAATAAAACGTGAT
66 CACCAA-AAATCATACAAAATTGACTCGGGGCTCCAGAACAC--TTTTACCCAATAAAACGTGAT
* * ** ** *
33889 GGTTAGTACACGATTTCGGCTAAAAACTGACTCGAA-AATTTTTTCTTCAATTTTTTGCCACAAT
128 GGTTAGTACACGATTTCGACTAAAAACTGACCCGAATTTTTTTTTC-TCAATTTTTAACCACAAC
* * * * * * *
33953 ACACAG-AAAAATATATAATCCAACACCAAAAAAATTGACAGACTGTTT-GCGCTTC-AA-A---
192 ACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCT-TTTCACGCTTCTAATATCG
* *
34011 ------TA----TC-G------CTTCTAATTAAATCGAAACAAGATTGACG-TGCTTGAAAAAA-
256 TTTTTCTATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAAAAC
* * * * * * *
34057 AAATTCCTTATATCCAATATTGATGATATTTGCTTCGATGAATATAGATATTTCAAGGATTCTTT
320 AAA-TCCATATATCCAATATGGCTAAGATTTGCTTCGATGAATATAAATATTTCAAGGAGTCTTT
* * * * * * *
34122 GCGCTAAGACTCAAGCAAAATTGAGCCGGGGCTCGGGAACGCGTTTTTAACCAAACACCGTGATG
384 GCGCTAAAAATCAAGAAAAATTGAGCCCGGGATCCGGAACGCGTTTTTAACCAAAAACCGTGATG
* * * * *
34187 GTTAGTACACAATTTCGGCTAAAAACCGACCCG--ATTTTTTTTTTCAATTTTTTGCCACAATAT
449 GTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACATTAC
* * * *** * * * *
34250 ATAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTT
514 ACA-AAAAAATATATAATTCAACACCAAAAAAATTGACAAACATTCCACACTTCTAATATCGTCT
*
34315 TTCTAT-TTTTTT---AATTAATTTCTAATTAAATCGAAACAAGATTTGAGATGCACGAAAAAAC
578 TTCT-TCTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTTGAGATGCTCGAAAAAAC
* * * * * * * * * *
34376 AAATCCTTGTATCTAATACTGCTGAGATTTACTTCAATGAATATAGATATTTCAAGGAATCTTTA
642 AAATCCTTATAGCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * * * ** *
34441 CGCCAAGAATCATGCAAAATTGA-CTCAGGGCTCAGGAATACGTTTTTTGCCAATAAAACGTGAT
707 TGCCAAAAATCATACAAAAATGAGCTGA-GGCTCCGG-A-AC---TTTAACCAA-AAACCGTGAT
** * * * * *
34505 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTCTCAATTTTTTGCCACAACAC
765 GGTTAGTACACGATTTCAACTAAAAACTTACCAG-AATTTTTTTTTCAATTTTTTGCCACAATAC
* * * * *
34570 TCAGAAAAA-ATATATA-ATTCAACGCCAAACAGATTGCCGGGCTTTTAATGCTTCTAATATCAT
829 ACA-AAAAATATATATATATTCAACGCCAAAAAGATTGACAGGCTTTTCATGCTTCTAATATCAT
* * * **
34633 TTTTCCATTTTTTCAAAATTTAGTTTCTAACTAAATCGA-AGCAAGA-TTGAGATGCTTGAAAAA
893 TTTTCTATTTTTT---AA-TTAATTTCTAATTAAATCGACA-CAAGATTTGAGATGCACG-AAAA
*
34696 AAT
952 AAC
* * * * * * * * *
34699 AAATCCTTATATCCAATATGGCTAAGATTT-TTTCGATGAATATAGATATTTGAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGACATTTGCTTAGATGAATATAAATATTTCAAGAAATCTTTG
* * * *** * * *
34763 CGCCAAAAATCTTGA-AAAAATGAGC-CGGGGCTTTGGAACGCGTTTTAAGCCAA-AAACCGTGA
66 CACCAAAAATCAT-ACAAAATTGA-CTCGGGGCTCCAGAACAC-TTTT-ACCCAATAAAACGTGA
* * * * * ** * **
34825 TGGTTAGTACACAATATCGGCTAAAAATTGTCCCGAAAATTTTTTCCTCAATTTTTTTGCCACAA
127 TGGTTAGTACACGATTTCGACTAAAAACTGACCCGAATTTTTTTTTCTCAA-TTTTTAACCACAA
* * * *** * *
34890 TACACA-AAAAAA-A-A-AA-TCAACACCAAAAA-ATTGACAAACATTTCGCGCTTCTAATATCG
191 CACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCG
* * * *
34949 TTTTTCCATTTTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTGACATGCTTGAAAAAA
256 TTTTTCTA-TTTTT-CTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA
* * * * * * *
35014 CAAATCCGTATATCCAATATTGCTGAGATTTGCTTCGATAAATATAGATATTTCACGGATTCTTT
319 CAAATCCATATATCCAATATGGCTAAGATTTGCTTCGATGAATATAAATATTTCAAGGAGTCTTT
* * * * * * *
35079 GCACTAAAAATCAAGCAAAATTAAGCCGGGGCTCCGGAACGCATTTTTAACCAAACACCGTGATG
384 GCGCTAAAAATCAAGAAAAATTGAGCCCGGGATCCGGAACGCGTTTTTAACCAAAAACCGTGATG
* * * * * * * * * *
35144 GTTAGTACACGATTTCAGCTAAAAATTTA-CC-AGATTTTTTTTTTCAATTTTTTGTCACAATAT
449 GTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACATTAC
* * *** * * * * *
35207 ACAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCATTT
514 ACA-AAAAAATATATAATTCAACACCAAAAAAATTGACAAACATTCCACACTTCTAATATCGTCT
* * *
35272 TTCTAT-TTTTTT---AATTAATTTCAAATTAAATCGAAATAAGATTTGAGATGCACGAAAAAAC
578 TTCT-TCTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTTGAGATGCTCGAAAAAAC
* * * * * * *
35333 AAATCCTTGTATCTAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGCAATCTTTG
642 AAATCCTTATAGCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTCAAGGAGTCTTTG
** * * * * * * ** *
35398 CACCAAGAATCATGCAAAATTGA-CTCAGGGATCTGGAACACGTTTTTTGCCAATAAAACGTGAT
707 TGCCAAAAATCATACAAAAATGAGCTGA-GGCTCCGG-A-AC---TTTAACCAA-AAACCGTGAT
** * *** * *
35462 GGTTAGTACACGATTTCGGCTAAAAA-TTGACCCGAAAAGTTTTCTCAATTTTTTGCCACAACAC
765 GGTTAGTACACGATTTCAACTAAAAACTT-ACCAGAATTTTTTTTTCAATTTTTTGCCACAATAC
* * * * * *
35526 TCAGAAAAA-ATATACA-ATTCAATGCCAAAGAGATTGCCAGGCTTTTCACGCTTCTAATATCAT
829 ACA-AAAAATATATATATATTCAACGCCAAAAAGATTGACAGGCTTTTCATGCTTCTAATATCAT
* * * *
35589 TTTTCCATTTTTTTCTGAATTAATTTCAAATTAAATCGAAACAAGA-TTGAGATGCTCGAAAAAA
893 TTTT-C-TATTTTT-T-AATTAATTTCTAATTAAATCGACACAAGATTTGAGATGCACGAAAAAA
35653 C
954 C
* * * * * * * *
35654 AAATCCTTATATCCAATATGGCTAAGATTTTTCTCA-ATGAATATAGATATTTGAA-AGAGTCTT
1 AAATCCTTATATCCAATATTGCTGACA-TTTGCTTAGATGAATATAAATATTTCAAGA-AATCTT
* * * *** * * * *
35717 TGCGCCAAAATTC-TTCAAAAATTGAAC-CGGGGCTTTGGAACGCGTATTGAGCCAA-AAACCGT
64 TGCACCAAAAATCATAC-AAAATTG-ACTCGGGGCTCCAGAACAC-T-TTTACCCAATAAAACGT
* * * * ** * * ** *
35779 GATGGTTAGTACACAATATCGGCTAAAAACTGACCCAAAAATTGTTTCCTCAATTTTTTGCCATA
125 GATGGTTAGTACACGATTTCGACTAAAAACTGACCCGAATTTTTTTTTCTCAATTTTTAACCACA
* * *
35844 ATA--CA-CAAAAA-A-A-AATTCAA---C------ATT-TC--G----T---GCTTCTAATATC
190 ACACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATC
* * *
35884 GTTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGACG-TGCTTGAAAAA
255 GTTTTTCTA-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGA-GATGCTCGAAAAA
* * * * *
35948 ACAAATCCTTATATCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGATTCTT
318 ACAAATCCATATATCCAATATGGCTAAGATTTGCTTCGATGAATATAAATATTTCAAGGAGTCTT
* * * * * * * *
36013 TGCGCTAAGACTCAAGCAAAATTGAGCCGGGGCTCCGGGACGCGTTTTTAACCGAAAACTGTGAT
383 TGCGCTAAAAATCAAGAAAAATTGAGCCCGGGATCCGGAACGCGTTTTTAACCAAAAACCGTGAT
* *
36078 TGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACATT
448 GGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTTCTCAATTTTTTGCCACATT
* * *** * *
36143 ACACATAAAAAATATATAATTCAACGCCAAAAATATTGACTTGCTTTTCACACTTCTAATATCGT
512 ACACA-AAAAAATATATAATTCAACACCAAAAAAATTGACAAACATTCCACACTTCTAATATCGT
** * *
36208 CTTTCTTCTTTTTTCTGAATTAATTTCTAATTTAATCGAAACAAGATTTGAGATGCTCGAGAAAA
576 CTTTCTTCTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTTGAGATGCTCGAAAAAA
* *
36273 CAAATCCTTATATCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTGAAGGAGTCTTT
641 CAAATCCTTATAGCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTCAAGGAGTCTTT
* * *
36338 GTGCCAAAAATCATACAAAAATGAGCTGAGGCTCCGGAACTTTAGCCAAACACCGTGATTGTTAG
706 GTGCCAAAAATCATACAAAAATGAGCTGAGGCTCCGGAACTTTAACCAAAAACCGTGATGGTTAG
* ***
36403 TACTCGATTTCAACTAAAAACTTATTTGAATTTTTTTTTCAATTTTTTGCCACAATACACAAAAA
771 TACACGATTTCAACTAAAAACTTACCAGAATTTTTTTTTCAATTTTTTGCCACAATACACAAAAA
* *
36468 ATATATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCATGCTTCTAATATCGTTTTTCTA
836 ATATATATAT-ATTCAACGCCAAAAAGATTGACAGGCTTTTCATGCTTCTAATATCATTTTTCTA
36533 TTTTTTAATTAATTTCTAATTAAATCGACACAAGATTTGAGATGCACGAAAAAAC
900 TTTTTTAATTAATTTCTAATTAAATCGACACAAGATTTGAGATGCACGAAAAAAC
* * * *
36588 AAATCCTTGTATCTAATATTGCTGAGATTTGCTTAGATGAATATAGATATTTCAAGAAATCTTTG
1 AAATCCTTATATCCAATATTGCTGACATTTGCTTAGATGAATATAAATATTTCAAGAAATCTTTG
* * *
36653 CACCAAGAATCATGCAAAATTGACTCTGGGCTCCAGAACACGTTTTTACCCAATAAAACGTGATG
66 CACCAAAAATCATACAAAATTGACTCGGGGCTCCAGAACAC--TTTTACCCAATAAAACGTGATG
* *
36718 GTTATTACACGATTTCGACTAAAAACTGACCCGAATTTTTTTTTCTCAATTTTTAACTACAACAC
129 GTTAGTACACGATTTCGACTAAAAACTGACCCGAATTTTTTTTTCTCAATTTTTAACCACAACAC
* * * * * *
36783 TCATAACAAATATATAATTCAACGCCAAAGAGATTGCCGGGCTTTTCACGCATCCT-ATATCATT
194 TCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGC-TTCTAATATCGTT
* *
36847 TTTCCATATTTTTCTGAATTCATTTCTAATTAAATCGAAAAAAGATTGAGATGCTCGAAAAAACA
258 TTT-C-TATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACA
* ** * *
36912 AATCCATATATTCAATATGGCTAAGATTTTTTTTGATGAATATAAATATTTTAAGGAGTCTTTGC
321 AATCCATATATCCAATATGGCTAAGATTTGCTTCGATGAATATAAATATTTCAAGGAGTCTTTGC
* ** *
36977 G-TCAAAAATCTAGAAAAATTGAGCCCGGGATTTGGAACGCGTTTTTAGCCAAAAACCGTGATGG
386 GCT-AAAAATCAAGAAAAATTGAGCCCGGGATCCGGAACGCGTTTTTAACCAAAAACCGTGATGG
37041 TTAGTACGTACACAATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTCTCAATTTTTTGCCAC-T
450 -T--TA-GTACACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAT
* ***
37104 ATACAC-AAAAAA-ATATAATTTAACACCAAAAAAAATTGACAAACATTCCGTGCTTCTAATATC
511 -TACACAAAAAAATATATAATTCAACACC-AAAAAAATTGACAAACATTCCACACTTCTAATATC
* *
37167 GTTTTTCCATT-TTTTTTCCAAATTAATTTCTGATTAAATCGAAACAAGA-TTGACG-TGCTCGA
574 GTCTTT-C-TTCTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTTGA-GATGCTCGA
* * *
37229 AAAAACAAATCCTTATAGCCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAGGAT
636 AAAAACAAATCCTTATAGCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTCAAGGAG
* *
37294 TCTTTGTGCTAAAAATCA-AGC-AAAATCGAGCTG-GAGCTTCGGAACGCGTTTTTAACCAAAAA
701 TCTTTGTGCCAAAAATCATA-CAAAAAT-GAGCTGAG-GCTCCGGAA--C---TTTAACCAAAAA
**
37356 CCGTGATGGTTAGTACACGATTTCGGCTAAAAA-TTAACCAGAAAATTTTTTTCTT-AATTTTTT
758 CCGTGATGGTTAGTACACGATTTCAACTAAAAACTT-ACCAG--AATTTTTTT-TTCAATTTTTT
**** * * *
37419 GCCACAATATTTGTAAAAA-ATATATAT-TTCAATGCCAAAAATATTTACAGGCTTTTCATGCTT
819 GCCACAATA-CACAAAAAATATATATATATTCAACGCCAAAAAGATTGACAGGCTTTTCATGCTT
* *
37482 CTAATATCATTTTTCTATTTTTTTTGAATTAATTTCTAATTCAATC-A-AGAAGATTTGAGATGC
883 CTAATATCATTTTTCTA--TTTTTT-AATTAATTTCTAATTAAATCGACACAAGATTTGAGATGC
*
37545 TCGAAAAAAC
945 ACGAAAAAAC
* * * * *
37555 AAATCCTTATATCCAATATTGTTGACATTTGGTTCGATGAATATAAATATTTCAAGGAGTCTTTG
1 AAATCCTTATATCCAATATTGCTGACATTTGCTTAGATGAATATAAATATTTCAAGAAATCTTTG
** * * * *
37620 TGCCAAAAATCATACAAAATTGAGC-CGGGGCTCC-GGA-AC-TTTAGCCAA-ACACCGTGATGG
66 CACCAAAAATCATACAAAATTGA-CTCGGGGCTCCAGAACACTTTTACCCAATAAAACGTGATGG
* * ** *
37680 TTAGTACACGATTTCGGCT-AAAACATGACCCG-ATTTTTTTTTTTCAATTTTTTGCCACAATAC
130 TTAGTACACGATTTCGACTAAAAAC-TGACCCGAATTTTTTTTTCTCAATTTTTAACCACAACAC
* *
37743 AT-AGAAAAAATATATCATTCAATGATGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATC
194 -TCAGAAAAAATATATAATTC-A--ACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATC
37807 GTTTTTCTATTTTT-T-AATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCT
255 GTTTTTCTATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCT
Statistics
Matches: 4357, Mismatches: 517, Indels: 361
0.83 0.10 0.07
Matches are distributed among these distances:
928 3 0.00
929 130 0.03
930 1 0.00
931 2 0.00
932 97 0.02
933 54 0.01
934 303 0.07
935 454 0.10
936 48 0.01
937 102 0.02
938 198 0.05
939 57 0.01
940 3 0.00
941 135 0.03
942 3 0.00
944 2 0.00
945 1 0.00
946 4 0.00
949 1 0.00
950 4 0.00
951 3 0.00
953 14 0.00
954 125 0.03
955 178 0.04
956 452 0.10
957 541 0.12
958 135 0.03
959 269 0.06
960 271 0.06
961 345 0.08
962 51 0.01
963 67 0.02
964 2 0.00
965 36 0.01
966 91 0.02
967 107 0.02
968 42 0.01
969 26 0.01
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (954 bp):
AAATCCTTATATCCAATATTGCTGACATTTGCTTAGATGAATATAAATATTTCAAGAAATCTTTG
CACCAAAAATCATACAAAATTGACTCGGGGCTCCAGAACACTTTTACCCAATAAAACGTGATGGT
TAGTACACGATTTCGACTAAAAACTGACCCGAATTTTTTTTTCTCAATTTTTAACCACAACACTC
AGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTT
CTATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCC
ATATATCCAATATGGCTAAGATTTGCTTCGATGAATATAAATATTTCAAGGAGTCTTTGCGCTAA
AAATCAAGAAAAATTGAGCCCGGGATCCGGAACGCGTTTTTAACCAAAAACCGTGATGGTTAGTA
CACAATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACATTACACAAAAA
AATATATAATTCAACACCAAAAAAATTGACAAACATTCCACACTTCTAATATCGTCTTTCTTCTT
TTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTTGAGATGCTCGAAAAAACAAATCCTTA
TAGCCAATATTGCTGACATTTGCTGCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAA
TCATACAAAAATGAGCTGAGGCTCCGGAACTTTAACCAAAAACCGTGATGGTTAGTACACGATTT
CAACTAAAAACTTACCAGAATTTTTTTTTCAATTTTTTGCCACAATACACAAAAAATATATATAT
ATTCAACGCCAAAAAGATTGACAGGCTTTTCATGCTTCTAATATCATTTTTCTATTTTTTAATTA
ATTTCTAATTAAATCGACACAAGATTTGAGATGCACGAAAAAAC
Done.